genome.fa.s1998.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01001998.1 Hibiscus syriacus cultivar Beakdansim tig00004089_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  118633

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2619--2662	21	2.2	20	87	4	61	31	27	25	15	1.96
3257--3303	23	2.0	24	91	4	78	44	0	21	34	1.52
3481--3598	31	3.8	31	91	0	191	21	21	20	37	1.95
3483--3632	62	2.5	60	87	8	209	21	21	20	36	1.95
7136--7182	23	2.0	24	91	4	78	44	0	21	34	1.52
7359--7507	31	5.0	31	81	10	170	22	20	22	34	1.96
7361--7490	58	2.2	58	90	6	208	22	20	21	35	1.96
11162--11218	11	5.3	11	73	23	50	57	0	0	42	0.98
11163--11209	23	2.0	24	87	4	69	55	0	0	44	0.99
19225--19265	22	2.0	21	85	9	57	43	4	0	51	1.23
21770--21801	15	2.2	15	94	5	57	65	0	3	31	1.08
23956--24000	3	14.7	3	82	13	56	66	0	0	33	0.92
24953--25184	97	2.3	100	83	7	285	46	16	12	24	1.82
24943--25176	51	4.7	51	80	7	282	47	16	11	23	1.80
26418--26454	2	18.5	2	100	0	74	48	0	0	51	1.00
29505--29633	60	2.1	61	83	5	156	39	18	4	37	1.72
29805--29947	58	2.4	58	79	13	139	39	4	23	32	1.74
36617--36883	136	2.0	136	88	0	399	22	22	21	32	1.98
36620--36909	68	4.3	68	75	5	289	22	23	21	32	1.98
38277--38374	31	3.2	31	84	5	101	39	5	12	42	1.64
38614--38658	13	4.0	12	81	18	53	71	0	0	28	0.87
40347--40425	40	2.0	39	95	2	140	15	5	15	64	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40538--40597	25	2.4	25	88	2	84	43	20	15	21	1.88
40533--40597	26	2.5	26	85	2	87	41	20	15	23	1.89
41751--41880	60	2.2	59	76	6	136	36	13	14	35	1.86
42365--42417	20	2.7	20	74	11	63	28	30	15	26	1.96
42398--42483	20	4.3	19	78	16	86	38	23	17	20	1.93
42398--42483	40	2.2	40	81	12	97	38	23	17	20	1.93
42606--42657	22	2.4	22	86	0	68	28	38	9	23	1.86
45128--45227	42	2.4	42	84	0	128	24	34	18	24	1.96
45128--45227	21	4.8	21	74	4	76	24	34	18	24	1.96
46604--46643	14	2.9	14	80	0	53	30	0	17	52	1.45
46553--46693	61	2.2	64	84	10	175	31	1	17	50	1.54
46972--47058	39	2.2	39	95	0	156	17	16	19	47	1.83
47360--47396	18	2.1	18	89	0	56	51	10	5	32	1.60
47779--47828	25	2.0	25	96	0	91	44	22	8	26	1.80
50379--50412	3	11.3	3	93	0	59	0	32	0	67	0.91
50587--50640	24	2.2	24	93	0	90	40	20	18	20	1.91
50587--50654	24	2.8	24	84	0	64	38	20	17	23	1.93
50766--50799	12	2.8	12	90	0	50	14	0	29	55	1.40
51544--51693	20	7.6	19	91	5	97	20	15	23	40	1.90
51582--51693	20	5.6	20	96	0	197	16	17	24	41	1.90
51685--51730	21	2.2	21	88	0	65	36	17	23	21	1.94
51738--51791	20	2.7	20	80	11	74	25	12	29	31	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55813--55877	33	2.0	33	90	6	105	33	10	24	30	1.90
57089--57151	21	3.0	20	86	6	90	53	3	4	38	1.38
57897--57982	24	3.6	24	96	0	154	9	12	24	53	1.68
57896--57975	14	6.3	14	78	21	95	8	13	25	52	1.69
57897--57995	24	4.1	24	90	5	137	11	12	22	54	1.68
57897--57995	48	2.1	48	90	0	153	11	12	22	54	1.68
58723--58797	10	7.7	10	69	21	61	9	12	21	57	1.62
58729--58793	16	4.1	16	95	0	121	7	12	23	56	1.61
58862--58894	16	2.1	16	100	0	66	6	12	24	57	1.57
60294--60318	6	4.2	6	100	0	50	16	0	0	84	0.63
60275--60332	18	3.3	18	78	7	57	27	0	1	70	0.97
66681--66742	21	3.2	21	67	21	62	50	14	3	32	1.59
66672--66742	37	1.9	36	94	2	124	49	15	2	32	1.59
71228--71288	21	3.2	21	63	26	53	50	16	1	31	1.55
71210--71288	36	2.2	36	88	2	115	49	17	1	31	1.55
78694--79014	175	1.8	176	89	2	511	31	17	16	34	1.92
82933--83504	66	8.7	65	71	11	306	26	10	19	42	1.84
82937--83268	127	2.6	125	76	6	326	25	10	19	44	1.83
86222--86265	20	2.2	20	83	0	52	72	0	25	2	0.96
88935--89005	37	1.9	37	94	0	124	16	38	9	35	1.82
88944--89016	37	2.0	37	89	5	112	16	39	9	34	1.81
92231--92258	9	3.1	9	100	0	56	10	0	0	89	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
93118--93184	32	2.1	32	85	0	89	37	14	11	35	1.84
98046--98079	15	2.2	16	94	5	61	79	0	14	5	0.91
98061--98087	12	2.2	12	100	0	54	77	0	14	7	0.97
101807--101846	21	1.9	21	89	0	62	52	20	7	20	1.70
106688--106713	13	2.0	13	100	0	52	15	23	23	38	1.92
112052--112081	3	10.0	3	100	0	60	33	0	0	66	0.92
114161--114225	26	2.5	26	87	0	103	29	21	16	32	1.96
114161--114217	13	4.4	13	93	0	96	31	21	15	31	1.94
114201--114358	85	1.9	85	86	2	228	32	19	18	29	1.96
118376--118432	18	3.1	17	76	18	60	42	0	3	54	1.17
118369--118432	20	3.2	20	80	10	87	42	0	3	54	1.16
118369--118444	38	2.0	39	86	2	109	40	1	6	51	1.36

Tables:   1

The End!