Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000002.1 Hibiscus syriacus cultivar Beakdansim tig00000003_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2131600

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1119 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2047915--2048039
55
2.3
55
90
4
191
12
22
11
54
1.68
2059672--2059715
19
2.4
18
85
7
54
29
15
27
27
1.96
2059761--2059818
20
2.6
22
86
10
75
31
18
22
27
1.97
2060722--2060796
32
2.3
34
78
15
79
32
0
17
50
1.46
2068695--2068743
23
2.2
23
88
3
73
20
34
22
22
1.97
2068728--2068782
19
2.8
20
80
5
67
23
32
25
18
1.97
2068740--2068787
19
2.6
19
93
3
80
20
33
29
16
1.95
2074309--2074371
18
3.6
17
75
14
65
80
0
4
14
0.86
2074412--2074455
21
2.0
21
86
8
61
75
11
4
9
1.19
2074434--2074504
25
2.7
25
82
10
72
80
4
7
8
1.02
2074462--2074504
13
3.2
13
80
6
50
86
0
9
4
0.71
2074702--2074753
2
26.5
2
92
3
88
51
1
0
46
1.12
2077986--2078015
16
1.9
15
93
6
51
13
0
10
76
1.01
2078052--2078091
21
1.9
21
90
10
64
47
0
0
52
1.00
2079029--2079553
260
2.0
260
90
0
818
28
15
21
33
1.94
2079751--2079797
24
2.0
24
87
8
69
57
0
10
31
1.33
2080154--2080196
12
3.1
14
83
16
63
46
4
6
41
1.51
2080148--2080190
12
3.3
13
84
12
61
44
9
6
39
1.64
2080179--2080333
33
4.8
33
93
3
278
47
9
3
40
1.51
2080186--2080332
6
22.6
7
66
27
58
46
9
2
41
1.51
2080179--2080333
64
2.4
64
97
2
292
47
9
3
40
1.51
2080824--2080889
30
2.2
30
91
0
105
10
36
6
46
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2081038--2081089
20
2.6
20
96
0
95
38
26
13
21
1.90
2081144--2081491
20
17.5
20
83
5
409
34
26
18
20
1.96
2082166--2082212
24
2.0
24
87
8
69
25
14
21
38
1.92
2082388--2082412
12
2.1
12
100
0
50
72
0
28
0
0.86
2087583--2087824
121
2.0
121
91
0
394
36
17
7
37
1.79
2090548--2090572
13
1.9
13
100
0
50
52
8
0
40
1.31
2094329--2094379
7
7.1
7
89
10
77
43
0
0
56
0.99
2094331--2094382
16
3.4
16
82
15
65
42
0
0
57
0.98
2094385--2094432
24
1.9
25
87
8
71
39
25
18
16
1.91
2096839--2096880
17
2.5
17
96
0
75
26
4
7
61
1.42
2114375--2114429
20
2.8
20
97
0
101
32
18
21
27
1.96
2115417--2115450
18
1.9
17
88
5
50
50
5
0
44
1.26
2127295--2127422
43
3.1
43
88
4
165
47
3
18
30
1.64
2127295--2127407
43
2.7
43
91
2
176
48
2
19
29
1.62
2127629--2127692
18
3.4
18
75
12
74
23
20
31
25
1.98
2127626--2127700
39
1.9
39
94
0
132
24
18
30
26
1.98
2127629--2127700
18
3.8
18
73
10
63
23
18
31
26
1.97

Tables:   1   2   3   4   5   6   7   8   9   10

The End!