Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000020.1 Hibiscus syriacus cultivar Beakdansim tig00000036_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61799

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2904--2958
3
18.3
3
100
0
110
65
0
0
34
0.93
7634--7688
24
2.5
22
78
18
62
58
5
21
14
1.57
11439--11480
19
2.2
19
91
0
66
23
4
4
66
1.30
12076--12116
2
20.5
2
100
0
82
48
0
0
51
1.00
12271--12295
8
3.1
8
100
0
50
64
0
0
36
0.94
15993--16038
15
3.1
15
87
6
67
21
0
32
45
1.52
15987--16035
14
3.4
14
86
5
62
22
0
30
46
1.52
17930--17956
11
2.5
11
100
0
54
74
7
0
18
1.05
19260--19998
44
16.9
44
67
9
316
30
19
19
30
1.96
19215--19998
132
6.0
132
86
3
1019
30
19
19
30
1.96
19471--19675
45
4.6
45
66
18
106
30
19
18
31
1.96
20361--20435
36
2.1
36
92
0
123
44
17
20
18
1.88
20639--20692
21
2.6
21
85
5
74
33
14
16
35
1.90
20794--21309
39
13.2
39
90
0
753
34
18
18
28
1.95
21312--21473
76
2.1
75
87
5
229
40
14
14
30
1.86
21313--21432
39
3.1
39
62
17
88
39
15
14
31
1.86
21844--21904
26
2.3
26
100
0
122
26
3
8
62
1.39
27621--27807
101
1.9
99
83
7
243
29
14
22
33
1.94
28497--28997
169
2.9
170
80
3
490
30
15
17
36
1.91
30436--30509
13
5.8
13
78
9
71
68
10
2
17
1.30
30507--30533
7
3.9
7
100
0
54
74
0
0
25
0.83
36089--36152
31
2.1
31
87
0
92
31
10
9
48
1.70
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39782--39850
23
3.0
22
78
4
75
27
26
23
23
2.00
39866--40083
103
2.1
103
96
0
400
37
24
12
25
1.91
40564--40601
20
1.9
20
88
0
58
10
31
34
23
1.89
40629--40671
21
2.0
21
81
0
50
16
25
30
27
1.97
46670--46738
23
3.0
23
80
0
75
26
26
23
24
2.00
46746--46971
103
2.2
103
95
1
409
37
24
12
24
1.91
47513--47555
21
2.0
21
81
0
50
16
25
30
27
1.97
49762--49799
3
12.7
3
94
0
67
28
0
0
71
0.87
51147--51205
29
2.0
30
83
9
77
28
6
3
61
1.38
51252--51286
11
3.1
11
91
4
52
31
2
0
65
1.07
54155--54189
12
2.9
12
91
0
52
34
22
2
40
1.69
55929--55972
22
2.0
22
95
0
79
47
9
15
27
1.76
59985--60018
16
2.1
16
89
10
52
44
2
2
50
1.32

Tables:   1

The End!