Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002000.1 Hibiscus syriacus cultivar Beakdansim tig00004092_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  65602

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4037--4066
15
2.0
15
93
0
51
36
3
0
60
1.14
5330--5367
20
1.9
20
100
0
76
36
10
28
23
1.88
5397--5476
35
2.3
35
97
0
151
20
6
32
41
1.77
9916--9970
4
13.8
4
92
0
83
49
3
1
45
1.30
9916--9970
6
9.2
6
91
0
83
49
3
1
45
1.30
9916--9970
10
5.5
10
91
0
83
49
3
1
45
1.30
25401--25495
27
3.6
27
95
2
167
41
15
11
31
1.83
29176--29243
27
2.6
27
95
4
122
41
16
11
30
1.84
30393--30460
3
23.0
3
82
8
86
29
2
1
66
1.15
30579--30700
25
4.9
25
90
4
192
36
18
15
28
1.92
32332--32365
16
2.1
16
94
0
59
14
0
5
79
0.91
40955--41252
92
3.2
92
90
2
431
26
29
19
25
1.98
41455--41513
3
20.0
3
79
10
68
28
3
1
66
1.18
41632--41753
25
4.9
25
87
6
185
36
18
15
29
1.91
43386--43419
16
2.1
16
94
0
59
14
0
5
79
0.91
46598--46649
18
2.8
18
85
5
68
51
1
1
44
1.23
47981--48024
21
2.0
22
82
4
54
40
0
20
38
1.53
49057--49106
18
2.8
18
96
0
91
28
34
22
16
1.95
50483--50537
10
5.3
10
74
8
56
32
12
9
45
1.74
50481--50537
21
2.7
21
100
0
114
31
12
8
47
1.72
50493--50531
11
3.6
11
79
6
53
25
15
10
48
1.76
51848--51916
16
4.5
16
68
17
56
40
17
1
40
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51856--51927
21
3.3
21
74
11
81
41
19
1
37
1.60
51838--51931
45
2.1
44
96
2
170
39
18
2
40
1.62
52155--52218
22
2.9
22
83
0
92
28
29
21
20
1.98
56134--56165
2
16.0
2
100
0
64
50
0
0
50
1.00
56990--57060
16
4.5
16
72
10
65
40
16
1
40
1.58
56998--57071
21
3.3
21
72
17
76
41
18
1
37
1.59
57299--57381
22
4.0
22
75
7
84
27
26
20
25
1.99
57514--57591
41
1.9
41
86
0
111
34
17
5
42
1.72
60820--60859
21
1.9
21
85
10
55
35
2
10
52
1.48
61581--61605
6
4.2
6
100
0
50
0
0
64
36
0.94
63375--63683
155
2.0
161
82
7
384
30
11
15
42
1.82
65509--65573
32
2.0
32
87
0
94
21
10
21
46
1.82

Tables:   1

The End!