genome.fa.s2002.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002002.1 Hibiscus syriacus cultivar Beakdansim tig00004097_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111927

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3301--3349	18	2.8	17	80	17	55	48	6	0	44	1.27
3307--3342	18	1.9	19	88	5	56	47	5	0	47	1.25
17891--18270	32	11.9	32	90	1	577	28	18	18	34	1.94
18480--18554	3	24.7	3	97	2	141	33	0	0	66	0.92
18883--18947	21	3.1	21	95	0	112	24	23	26	26	2.00
21078--21185	39	2.8	38	85	4	128	37	12	0	49	1.48
21949--21974	2	13.0	2	100	0	52	50	0	0	50	1.00
23153--23191	14	3.0	13	82	10	53	58	2	0	38	1.12
23871--23899	13	2.2	13	100	0	58	6	62	31	0	1.22
24594--24648	11	5.0	11	82	8	67	56	0	0	43	0.99
24605--24669	3	21.7	3	75	6	60	55	0	0	44	0.99
24605--24673	36	1.9	36	85	5	95	53	0	0	46	1.00
24824--25924	76	14.4	76	96	0	1934	35	20	21	21	1.96
29382--29636	83	3.1	83	98	0	483	35	20	14	29	1.92
31921--31955	13	2.6	13	90	4	52	0	20	0	80	0.72
37300--37338	14	3.0	13	82	10	53	58	2	0	38	1.12
37436--37473	19	2.1	19	95	5	69	71	5	5	18	1.25
38027--38055	13	2.2	13	100	0	58	6	62	31	0	1.22
38762--38835	3	25.3	3	78	5	80	56	0	0	43	0.99
38751--38808	14	4.5	14	75	18	63	56	0	0	43	0.99
43197--43221	13	1.9	13	100	0	50	24	0	4	72	1.02
52739--52826	24	3.7	24	85	0	122	23	18	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58337--58368	3	10.7	3	100	0	64	68	0	0	31	0.90
58577--58615	2	19.5	2	94	0	69	48	0	2	48	1.15
65790--65862	23	3.2	23	94	0	119	39	21	4	34	1.73
66281--66353	23	3.2	23	90	0	110	38	20	5	35	1.76
65388--67727	476	4.8	488	93	2	3942	40	10	7	41	1.67
66757--66829	23	3.2	23	92	0	119	38	21	5	34	1.77
67233--67305	23	3.2	23	90	0	110	38	17	6	36	1.77
70808--70864	30	1.9	30	88	0	87	64	8	5	21	1.41
71762--71792	15	2.1	15	93	0	53	45	0	0	54	0.99
73464--73572	24	4.6	24	79	2	121	10	11	19	58	1.61
73460--73572	47	2.4	47	83	1	127	10	11	18	59	1.60
73919--73957	19	2.0	21	85	10	55	56	2	2	38	1.27
77818--77881	24	2.8	24	76	21	75	29	20	29	20	1.97
86402--86440	19	2.0	21	85	10	55	56	2	2	38	1.27
91192--91273	29	2.8	29	92	1	128	32	13	13	40	1.83
95936--96017	29	2.8	29	94	1	137	32	14	12	40	1.83
98096--98123	6	4.7	6	100	0	56	46	0	0	53	1.00
104067--104146	11	7.7	10	72	14	56	43	1	3	51	1.27
104067--104153	31	2.8	30	83	10	104	42	1	3	52	1.25
104213--104266	27	2.2	24	83	12	65	59	5	5	29	1.43
104859--104945	31	2.8	30	77	10	86	54	4	1	40	1.29
107521--107642	38	3.2	39	85	8	162	46	1	4	47	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109378--109451	29	2.5	29	88	2	103	35	14	9	40	1.79
111499--111532	6	5.7	6	100	0	68	47	0	0	52	1.00

Tables:   1

The End!