Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002003.1 Hibiscus syriacus cultivar Beakdansim tig00004098_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70361

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2874--2908
16
2.1
17
94
5
63
22
5
0
71
1.07
6418--6477
31
1.9
31
82
0
75
21
15
10
53
1.70
8833--8860
2
14.0
2
100
0
56
50
0
0
50
1.00
11813--11844
15
2.1
15
94
0
55
9
25
12
53
1.68
21736--21781
12
3.6
12
81
16
56
45
17
19
17
1.85
21742--21782
12
3.1
13
80
19
57
46
14
17
21
1.84
24083--24122
21
1.9
21
94
0
71
30
15
7
47
1.72
24117--24215
33
3.0
33
94
1
164
32
7
15
45
1.73
24201--24255
13
4.2
13
75
13
58
34
3
12
49
1.59
24451--24504
21
2.6
21
90
0
90
20
24
27
27
1.99
24805--24836
16
2.0
17
88
11
50
43
21
21
12
1.86
31403--31451
18
2.7
18
84
9
55
48
6
2
42
1.39
32557--32890
89
3.7
89
90
1
515
28
24
25
21
1.99
34525--34608
2
43.5
2
74
15
61
50
1
3
45
1.27
34744--34804
24
2.5
24
84
7
70
50
6
0
42
1.28
34864--34983
64
1.9
64
96
0
222
54
9
6
30
1.58
40243--40383
64
2.2
63
83
7
169
37
18
17
26
1.93
41627--41722
30
3.2
30
82
2
104
18
19
26
35
1.95
48950--49017
24
2.9
23
78
6
73
20
17
14
47
1.83
48950--49039
24
3.8
23
77
5
72
20
15
15
48
1.80
52972--53022
25
2.0
25
82
14
61
45
7
15
31
1.75
55019--55152
60
2.2
60
85
2
180
30
17
19
32
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
64384--64421
18
2.1
18
90
0
58
31
36
10
21
1.87
69304--69367
23
2.8
23
88
9
87
29
25
23
21
1.99
69383--69703
103
3.1
103
94
0
554
38
23
11
26
1.89
70252--70294
21
2.0
21
86
0
59
16
25
27
30
1.97

Tables:   1

The End!