Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002005.1 Hibiscus syriacus cultivar Beakdansim tig00004100_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  96017

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9772--9844
38
1.9
38
85
0
101
50
8
8
32
1.62
21239--21266
12
2.3
12
100
0
56
7
0
50
42
1.30
26938--27125
93
2.0
93
94
0
331
34
9
22
34
1.86
38120--38172
19
2.8
19
94
0
88
26
18
30
24
1.98
38312--38366
19
2.8
20
91
2
85
20
16
34
29
1.94
39254--39291
18
2.1
18
95
0
67
28
23
2
44
1.67
47961--48008
25
1.9
25
86
0
69
0
33
14
52
1.42
47975--48013
19
2.1
19
85
0
51
0
33
12
53
1.39
48485--48546
3
20.7
3
96
0
115
64
0
1
33
1.03
48864--49526
113
5.9
113
92
1
1051
30
18
12
38
1.89
50258--50910
83
7.9
83
98
0
1218
37
23
12
25
1.90
52044--52095
21
2.5
20
87
6
68
0
17
0
82
0.66
52044--52095
10
5.0
10
79
9
59
0
17
0
82
0.66
62703--62737
17
2.1
17
88
0
52
60
0
5
34
1.21
62772--62796
7
3.6
7
100
0
50
32
0
0
68
0.90
64364--64411
25
1.9
25
86
0
69
0
33
14
52
1.42
64378--64416
19
2.1
19
85
0
51
0
33
12
53
1.39
64896--64957
3
20.7
3
96
0
115
64
0
1
33
1.03
65298--65380
38
2.2
39
97
2
159
34
7
13
44
1.71
66763--66789
2
13.5
2
100
0
54
48
0
0
51
1.00
81925--81949
2
12.5
2
100
0
50
52
0
0
48
1.00
82246--82283
20
1.9
19
89
5
58
47
0
2
50
1.15
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
82251--82299
13
3.8
13
81
5
55
57
0
0
42
0.99
82251--82302
25
2.0
26
85
3
70
55
0
0
44
0.99
82825--82881
28
2.0
28
86
0
78
40
14
10
35
1.80

Tables:   1

The End!