genome.fa.s2007.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002007.1 Hibiscus syriacus cultivar Beakdansim tig00004104_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83305

Tables:   1   

This is table  1  of  1  ( 43 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1642--1734	47	2.0	45	83	10	116	49	4	19	26	1.67
13504--13543	21	1.9	21	84	0	53	25	10	12	52	1.70
14603--14644	16	2.5	18	77	18	54	61	0	0	38	0.96
15494--15560	21	3.2	21	72	4	73	14	19	28	37	1.91
15525--15666	34	3.9	35	87	6	171	12	20	26	40	1.88
15525--15627	34	3.0	34	92	0	179	9	20	27	42	1.83
15589--15691	41	2.5	41	84	4	136	15	21	25	37	1.92
16611--16660	13	3.7	13	91	5	73	40	2	0	58	1.10
16734--16787	15	3.7	15	78	9	67	37	1	1	59	1.19
18101--18153	16	3.3	16	91	0	88	60	20	9	9	1.55
19252--19340	10	7.3	13	74	25	88	56	22	13	7	1.63
19232--19340	24	4.6	24	94	4	177	56	20	12	10	1.64
24762--24910	68	2.2	68	93	1	255	38	14	23	24	1.91
27623--27656	2	17.0	2	100	0	68	50	0	50	0	1.00
35532--35564	16	2.1	16	88	5	50	12	21	12	54	1.69
36037--36105	15	4.3	16	73	10	52	26	27	28	17	1.97
36416--36456	20	2.1	20	86	4	57	41	14	9	34	1.79
39363--39399	19	1.9	19	88	0	56	40	8	16	35	1.78
44189--44235	21	2.2	21	100	0	94	25	19	12	42	1.86
51884--52271	71	5.5	73	74	6	226	30	16	10	42	1.83
51884--52272	73	5.5	72	76	6	332	30	16	10	42	1.83
51959--52205	68	3.5	68	80	3	224	27	15	12	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51944--52272	70	4.7	71	75	7	269	30	16	10	42	1.82
55036--55146	3	36.7	3	92	1	186	63	0	2	34	1.09
55465--55885	113	3.7	113	95	0	718	28	19	14	38	1.90
56642--57193	85	6.6	84	95	1	952	35	22	13	28	1.92
56642--57193	169	3.3	168	94	1	968	35	22	13	28	1.92
56642--57199	254	2.2	249	94	2	967	35	21	13	29	1.92
58342--58419	10	7.7	10	87	10	106	0	12	0	87	0.55
58342--58420	30	2.6	32	88	8	119	0	12	0	87	0.55
58342--58407	1	66.0	1	78	0	69	0	10	0	89	0.49
71119--71207	3	29.7	3	90	0	142	61	0	3	34	1.12
74882--74953	36	2.0	36	91	0	117	33	15	18	33	1.92
74936--74972	19	1.9	19	100	0	74	43	13	21	21	1.87
78478--78769	105	2.7	105	89	2	440	23	20	16	39	1.92
79693--79751	19	2.8	22	77	15	79	33	25	15	25	1.95
79795--80043	52	4.6	53	80	7	243	38	18	11	31	1.87
80262--80369	36	3.0	37	83	6	123	37	13	21	26	1.91
80498--80673	66	2.7	66	91	2	273	45	10	15	28	1.79
80630--80788	37	4.5	37	70	10	136	44	8	16	29	1.78
80724--80812	37	2.4	37	79	3	99	39	10	20	30	1.85
80564--80791	103	2.2	103	95	1	404	43	9	16	29	1.80
83181--83218	20	1.9	20	89	10	60	13	28	0	57	1.36

Tables:   1

The End!