Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002008.1 Hibiscus syriacus cultivar Beakdansim tig00004106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53109

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2730--2792
23
2.8
23
80
2
56
38
3
4
53
1.38
2776--2811
15
2.4
15
90
0
54
38
0
2
58
1.13
2953--3018
21
3.2
21
78
4
62
37
18
16
27
1.92
3072--3214
57
2.5
57
94
0
241
26
14
22
36
1.93
3194--3234
20
2.0
20
95
0
73
21
17
21
39
1.93
3253--3298
20
2.3
20
92
0
74
32
15
17
34
1.91
3119--3311
77
2.5
76
77
9
228
29
14
19
36
1.91
3291--3390
20
5.0
20
88
0
119
30
11
15
44
1.80
3396--3543
57
2.6
57
94
0
260
36
20
15
27
1.93
3546--3601
20
2.8
20
94
0
94
14
23
21
41
1.89
5116--5144
2
14.5
2
100
0
58
48
0
0
51
1.00
7977--8011
2
17.5
2
100
0
70
51
0
0
48
1.00
14140--14178
19
2.1
19
86
13
55
58
5
5
30
1.41
14630--14682
24
2.2
24
82
0
61
37
22
15
24
1.92
15364--15548
29
6.4
29
81
7
121
39
21
4
34
1.74
15384--15547
58
2.8
59
82
4
197
39
21
5
33
1.76
15384--15518
29
4.6
29
87
2
182
39
20
5
34
1.77
15384--15548
29
5.6
30
84
4
178
39
21
5
33
1.77
21189--21214
13
2.0
13
100
0
52
30
15
23
30
1.95
24791--24847
28
2.0
28
100
0
114
40
7
17
35
1.77
32864--32899
17
2.1
17
94
0
63
66
0
0
33
0.92
34134--34206
23
3.2
23
92
0
119
38
19
5
36
1.75
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33728--35372
490
3.4
489
95
0
2934
39
10
7
42
1.68
34625--34697
23
3.2
23
88
0
101
39
19
5
35
1.75
35114--35186
23
3.2
23
84
0
92
39
20
5
34
1.76
38075--38321
120
2.1
120
93
0
431
37
15
13
32
1.87
37913--39109
303
4.0
303
96
0
2162
34
16
14
34
1.89
38378--38624
120
2.1
120
95
0
440
38
15
14
31
1.88
38681--38927
120
2.1
120
97
0
467
37
15
13
33
1.87
38801--39204
182
2.2
183
96
0
747
33
16
15
34
1.90
40415--40460
18
2.6
18
85
0
56
21
32
6
39
1.79
40415--40460
12
3.8
12
85
0
56
21
32
6
39
1.79
41952--43072
200
5.6
200
96
0
1990
31
18
14
36
1.91
43316--43376
19
3.3
18
88
2
59
52
11
1
34
1.47
43328--43376
19
2.6
19
96
0
89
55
10
2
32
1.45
45099--45164
33
2.0
33
87
0
96
24
46
0
28
1.52
45198--45283
21
4.1
21
92
0
136
16
30
10
43
1.81
47515--47561
20
2.4
19
79
10
58
17
14
12
55
1.70
47538--47875
161
2.1
162
90
0
534
27
17
14
40
1.88

Tables:   1

The End!