genome.fa.s2010.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002010.1 Hibiscus syriacus cultivar Beakdansim tig00004109_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121478

Tables:   1   

This is table  1  of  1  ( 54 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870--1011	55	2.6	55	88	0	212	21	23	11	42	1.86
7493--7528	17	2.0	19	89	10	58	66	0	8	25	1.19
7773--7809	16	2.3	16	90	0	56	10	13	37	37	1.80
16245--16270	5	5.2	5	100	0	52	23	57	19	0	1.40
33254--33296	23	1.9	23	90	4	70	23	25	23	27	2.00
37248--37272	13	1.9	13	100	0	50	72	0	0	28	0.86
37256--37302	17	2.9	16	84	6	51	74	6	0	19	1.03
43667--43737	28	2.5	28	90	0	106	19	12	26	40	1.88
47881--47953	28	2.6	28	86	0	110	17	13	30	38	1.89
56810--56882	29	2.5	30	86	6	96	46	6	9	36	1.63
57218--57281	16	4.1	16	76	23	57	51	0	0	48	1.00
57168--57320	50	3.1	48	76	20	117	51	1	1	44	1.23
57284--57334	19	2.7	19	75	9	50	62	0	1	35	1.06
57684--57721	19	2.0	20	84	5	51	63	2	0	34	1.09
57669--57736	28	2.4	28	90	0	100	55	1	1	41	1.18
65216--65255	20	2.0	19	85	9	53	60	0	0	40	0.97
65231--65302	26	2.8	25	83	8	74	59	1	1	37	1.15
65264--65338	26	3.0	26	84	11	86	54	0	4	41	1.19
65276--65356	25	3.2	26	79	11	89	51	0	4	43	1.23
65942--65995	25	2.2	25	83	3	65	59	0	1	38	1.08
66306--66411	39	2.7	38	81	11	115	43	2	17	35	1.64
66797--66864	31	2.2	31	94	0	118	47	10	10	32	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67320--67379	23	2.5	25	76	15	63	43	0	1	55	1.10
73348--73397	15	3.4	14	78	10	55	34	0	2	64	1.05
75595--75634	19	2.1	19	85	0	53	32	2	7	57	1.40
85023--85062	21	1.9	21	89	0	62	25	40	25	10	1.86
90307--90442	59	2.3	59	83	2	175	29	17	25	27	1.97
90531--90669	45	3.1	45	83	2	188	38	6	23	31	1.80
90538--90669	46	2.9	45	84	2	183	37	6	23	31	1.81
92906--93013	29	3.7	29	92	0	171	14	39	24	21	1.91
93263--93309	23	2.1	22	96	4	85	21	21	19	38	1.94
93266--93311	11	4.1	11	88	5	74	23	19	19	36	1.95
93428--93489	23	2.7	23	87	2	88	58	1	37	3	1.24
93542--93650	39	2.8	39	85	10	143	36	2	16	44	1.62
93627--93675	22	2.2	23	78	10	57	26	2	16	55	1.52
93734--93786	28	1.9	27	88	3	79	32	1	16	49	1.57
93733--93797	27	2.3	29	82	10	82	36	1	15	46	1.55
94008--94047	21	1.9	21	94	0	71	30	0	12	57	1.36
94234--94353	30	4.3	30	76	19	127	42	0	12	44	1.48
94267--94347	22	3.3	22	73	23	81	44	0	13	41	1.44
94274--94324	15	3.3	16	72	10	61	45	0	13	41	1.44
94300--94338	11	3.5	11	80	13	53	48	0	12	38	1.42
98246--98308	28	2.2	30	94	5	112	57	12	0	30	1.36
98250--98315	28	2.4	28	87	10	107	56	12	0	31	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98285--98333	21	2.3	21	85	3	71	53	16	0	30	1.43
98747--98790	23	1.9	23	100	0	88	27	27	22	22	1.99
98833--98915	29	2.9	29	83	0	94	15	24	38	21	1.92
102867--102902	19	1.9	19	88	5	56	33	0	5	61	1.19
103355--103441	23	3.8	23	86	3	113	44	14	25	14	1.84
103462--103490	12	2.3	13	94	5	51	82	0	10	6	0.83
111186--111270	2	42.5	2	100	0	170	0	50	0	49	1.00
113682--113718	20	1.9	19	89	10	58	45	10	24	18	1.81
113093--114241	637	1.8	633	91	3	1918	40	9	14	35	1.78
120599--120638	22	1.9	22	85	10	57	32	7	7	52	1.58

Tables:   1

The End!