Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002011.1 Hibiscus syriacus cultivar Beakdansim tig00004110_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 66087
ACGTcount: A:0.33, C:0.17, G:0.18, T:0.33
Found at i:989 original size:31 final size:31
Alignment explanation
Indices: 954--1029 Score: 98
Period size: 31 Copynumber: 2.5 Consensus size: 31
944 CTAACGTGAC
*
954 TCTTGGGTAAGCTCTACGGCCCTGAAATCAT
1 TCTTGGGTAAGCCCTACGGCCCTGAAATCAT
* * * *
985 TCTTGGGTAGGCCCTGCGGCCCTGAGATCTT
1 TCTTGGGTAAGCCCTACGGCCCTGAAATCAT
*
1016 TCTTGGGTAGGCCC
1 TCTTGGGTAAGCCC
1030 CGTGGCCTTG
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 40 1.00
ACGTcount: A:0.14, C:0.28, G:0.29, T:0.29
Consensus pattern (31 bp):
TCTTGGGTAAGCCCTACGGCCCTGAAATCAT
Found at i:1042 original size:31 final size:31
Alignment explanation
Indices: 970--1056 Score: 104
Period size: 31 Copynumber: 2.8 Consensus size: 31
960 GTAAGCTCTA
* *
970 CGGCCCTGA-AATCATTCTTGGGTAGGCCCTG
1 CGGCCCTGAGAA-CTTTCTTGGGTAGGCCCCG
*
1001 CGGCCCTGAGATCTTTCTTGGGTAGGCCCCG
1 CGGCCCTGAGAACTTTCTTGGGTAGGCCCCG
* * *
1032 TGGCCTTGAGAACTTTATTGGGTAG
1 CGGCCCTGAGAACTTTCTTGGGTAG
1057 ACTCTCAGGC
Statistics
Matches: 48, Mismatches: 7, Indels: 2
0.84 0.12 0.04
Matches are distributed among these distances:
31 47 0.98
32 1 0.02
ACGTcount: A:0.15, C:0.25, G:0.31, T:0.29
Consensus pattern (31 bp):
CGGCCCTGAGAACTTTCTTGGGTAGGCCCCG
Found at i:1203 original size:14 final size:14
Alignment explanation
Indices: 1184--1211 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
1174 TATGGTTTTA
1184 AAGAAGTAGATATT
1 AAGAAGTAGATATT
1198 AAGAAGTAGATATT
1 AAGAAGTAGATATT
1212 CGTGAGACAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.00, G:0.21, T:0.29
Consensus pattern (14 bp):
AAGAAGTAGATATT
Found at i:11079 original size:15 final size:15
Alignment explanation
Indices: 11059--11089 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
11049 AATGTTTTGT
11059 CCCAATCGTGCTGCA
1 CCCAATCGTGCTGCA
11074 CCCAATCGTGCTGCA
1 CCCAATCGTGCTGCA
11089 C
1 C
11090 TCTTTTCCCC
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.19, C:0.42, G:0.19, T:0.19
Consensus pattern (15 bp):
CCCAATCGTGCTGCA
Found at i:11299 original size:21 final size:21
Alignment explanation
Indices: 11269--11318 Score: 59
Period size: 21 Copynumber: 2.4 Consensus size: 21
11259 ATCACGTATA
11269 TTAAT-TTTAGAATTTA-TGAT
1 TTAATATTTAGAATTTAGTG-T
**
11289 TTAATATTTAGGGTTTAGTGT
1 TTAATATTTAGAATTTAGTGT
11310 TTAATATTT
1 TTAATATTT
11319 TAAGATTAAG
Statistics
Matches: 26, Mismatches: 2, Indels: 3
0.84 0.06 0.10
Matches are distributed among these distances:
20 5 0.19
21 19 0.73
22 2 0.08
ACGTcount: A:0.30, C:0.00, G:0.14, T:0.56
Consensus pattern (21 bp):
TTAATATTTAGAATTTAGTGT
Found at i:21268 original size:2 final size:2
Alignment explanation
Indices: 21261--21286 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
21251 ATGGGAGTGC
21261 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
21287 GTTTCCTTGT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:26422 original size:19 final size:19
Alignment explanation
Indices: 26398--26439 Score: 84
Period size: 19 Copynumber: 2.2 Consensus size: 19
26388 AAAAAGAAAA
26398 GAAAGAAATCAAATTCTTT
1 GAAAGAAATCAAATTCTTT
26417 GAAAGAAATCAAATTCTTT
1 GAAAGAAATCAAATTCTTT
26436 GAAA
1 GAAA
26440 TAAAAGAGAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 23 1.00
ACGTcount: A:0.50, C:0.10, G:0.12, T:0.29
Consensus pattern (19 bp):
GAAAGAAATCAAATTCTTT
Found at i:26723 original size:24 final size:24
Alignment explanation
Indices: 26690--26744 Score: 83
Period size: 24 Copynumber: 2.3 Consensus size: 24
26680 AAAAAGATTA
* *
26690 TTTTCTAAGAAAGAGAGAAAATAT
1 TTTTCAAAGAAAGAGAGAAAACAT
*
26714 TTTTCAAAGAATGAGAGAAAACAT
1 TTTTCAAAGAAAGAGAGAAAACAT
26738 TTTTCAA
1 TTTTCAA
26745 GTGAAGAATA
Statistics
Matches: 28, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.47, C:0.07, G:0.15, T:0.31
Consensus pattern (24 bp):
TTTTCAAAGAAAGAGAGAAAACAT
Found at i:27000 original size:83 final size:83
Alignment explanation
Indices: 26832--27155 Score: 471
Period size: 83 Copynumber: 4.0 Consensus size: 83
26822 GAATTTCAAA
* * *
26832 AGAGTTTTACTCCAACTAAAACTCTTTTAATATCT-GA---AAATAGATAATAATATCTTTAAAA
1 AGAGTTTTACTCCAACCAAAACTCTTTTAATATCTAAATTTAAATAGATAATAATATCTTTTAAA
* *
26893 TTTAAAATATTAAATCTG
66 TTTATAATATTAAACCTG
** * *
26911 AGAGTTTTACTTTAACCAAAACTCTTTTAATATCTAAATTTAAACAGATTATAATATCTTTTAAA
1 AGAGTTTTACTCCAACCAAAACTCTTTTAATATCTAAATTTAAATAGATAATAATATCTTTTAAA
26976 TTTATAATATTAAACCTG
66 TTTATAATATTAAACCTG
* * * * *
26994 ATAGTTTTACTCCAACCGAAACTCTTTTAATATATAAATTTAGATAGATTATAATATCTTTTAAA
1 AGAGTTTTACTCCAACCAAAACTCTTTTAATATCTAAATTTAAATAGATAATAATATCTTTTAAA
27059 TTTATAATATTAAACCTG
66 TTTATAATATTAAACCTG
27077 AGAGTTTTACTCCAACCAAAACTCTTTTAATATCTAAATTTAAATAGATAATAATAT-TATTTAA
1 AGAGTTTTACTCCAACCAAAACTCTTTTAATATCTAAATTTAAATAGATAATAATATCT-TTTAA
27141 ATTTA-AATATTAAAC
65 ATTTATAATATTAAAC
27156 ATATATTCCC
Statistics
Matches: 219, Mismatches: 21, Indels: 7
0.89 0.09 0.03
Matches are distributed among these distances:
79 32 0.15
80 1 0.00
82 11 0.05
83 175 0.80
ACGTcount: A:0.43, C:0.12, G:0.05, T:0.40
Consensus pattern (83 bp):
AGAGTTTTACTCCAACCAAAACTCTTTTAATATCTAAATTTAAATAGATAATAATATCTTTTAAA
TTTATAATATTAAACCTG
Found at i:27026 original size:41 final size:42
Alignment explanation
Indices: 26980--27114 Score: 93
Period size: 41 Copynumber: 3.3 Consensus size: 42
26970 TTTAAATTTA
*
26980 TAATAT-TAAACCTGATAGTTTTACTCCAACCGAAACTCTTT
1 TAATATATAAACCTGATAGTTTTACTCCAACCAAAACTCTTT
** * * * ** *
27021 TAATATATAAATTTAGATAGATTATAAT--ATCTTTTAAA-T-TTA
1 TAATATATAAACCT-GATAG-TTTTACTCCAAC--CAAAACTCTTT
*
27063 TAATAT-TAAACCTGAGAGTTTTACTCCAACCAAAACTCTTT
1 TAATATATAAACCTGATAGTTTTACTCCAACCAAAACTCTTT
*
27104 TAATATCTAAA
1 TAATATATAAA
27115 TTTAAATAGA
Statistics
Matches: 67, Mismatches: 17, Indels: 19
0.65 0.17 0.18
Matches are distributed among these distances:
39 8 0.12
40 5 0.07
41 21 0.31
42 19 0.28
43 6 0.09
44 8 0.12
ACGTcount: A:0.40, C:0.15, G:0.06, T:0.39
Consensus pattern (42 bp):
TAATATATAAACCTGATAGTTTTACTCCAACCAAAACTCTTT
Found at i:37165 original size:29 final size:30
Alignment explanation
Indices: 37104--37171 Score: 84
Period size: 29 Copynumber: 2.2 Consensus size: 30
37094 AATTAATCGC
*
37104 TACCCGAATATTGAAAAAAAAACGTTAATCGT
1 TACCCGAATATT--AAAAAAAACGTTAACCGT
*
37136 TACCCGAATATT-AAAAAAATGTTAACCGT
1 TACCCGAATATTAAAAAAAACGTTAACCGT
*
37165 TCCCCGA
1 TACCCGA
37172 TCGAACTAAT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
29 21 0.64
32 12 0.36
ACGTcount: A:0.43, C:0.21, G:0.12, T:0.25
Consensus pattern (30 bp):
TACCCGAATATTAAAAAAAACGTTAACCGT
Found at i:38947 original size:4 final size:4
Alignment explanation
Indices: 38938--38963 Score: 52
Period size: 4 Copynumber: 6.5 Consensus size: 4
38928 ACATTTATCC
38938 TTTA TTTA TTTA TTTA TTTA TTTA TT
1 TTTA TTTA TTTA TTTA TTTA TTTA TT
38964 ATTAGCCCTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
4 22 1.00
ACGTcount: A:0.23, C:0.00, G:0.00, T:0.77
Consensus pattern (4 bp):
TTTA
Found at i:40800 original size:3 final size:3
Alignment explanation
Indices: 40792--40817 Score: 52
Period size: 3 Copynumber: 8.7 Consensus size: 3
40782 TATGCCCCCT
40792 TAA TAA TAA TAA TAA TAA TAA TAA TA
1 TAA TAA TAA TAA TAA TAA TAA TAA TA
40818 CCAATTATGG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 23 1.00
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:42714 original size:19 final size:20
Alignment explanation
Indices: 42637--42727 Score: 87
Period size: 19 Copynumber: 4.4 Consensus size: 20
42627 AACGCGATTT
*
42637 TGAAAAATGTGTTGCGATAA
1 TGAAAAATGTGTTGCGATAG
* *
42657 T-TAAAATGTGTTGCGAGAG
1 TGAAAAATGTGTTGCGATAG
42676 TTTGAAAAACATGTTGTTGCGATAG
1 --TG-AAAA-ATG-TGTTGCGATAG
*
42701 TGAAAAA-GTGTTGCTATAG
1 TGAAAAATGTGTTGCGATAG
42720 TGAAAAAT
1 TGAAAAAT
42728 CCAAAAAAAA
Statistics
Matches: 58, Mismatches: 6, Indels: 14
0.74 0.08 0.18
Matches are distributed among these distances:
19 32 0.55
20 2 0.03
21 2 0.03
22 4 0.07
23 5 0.09
24 3 0.05
25 10 0.17
ACGTcount: A:0.37, C:0.05, G:0.25, T:0.32
Consensus pattern (20 bp):
TGAAAAATGTGTTGCGATAG
Found at i:43021 original size:6 final size:6
Alignment explanation
Indices: 43010--43036 Score: 54
Period size: 6 Copynumber: 4.5 Consensus size: 6
43000 TCCCGTCTCG
43010 GGTCGT GGTCGT GGTCGT GGTCGT GGT
1 GGTCGT GGTCGT GGTCGT GGTCGT GGT
43037 AATACGTGTC
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 21 1.00
ACGTcount: A:0.00, C:0.15, G:0.52, T:0.33
Consensus pattern (6 bp):
GGTCGT
Found at i:43141 original size:20 final size:20
Alignment explanation
Indices: 43116--43180 Score: 60
Period size: 20 Copynumber: 3.2 Consensus size: 20
43106 TACCACCAGT
*
43116 CGTTGCGATAGTCAGAATCG
1 CGTTGCGATAGTCAAAATCG
* ** *
43136 CGTTGCGATTTTGT-ATTATCA
1 CGTTGCGA--TAGTCAAAATCG
43157 CGTTGCGATAGTCAAAATCG
1 CGTTGCGATAGTCAAAATCG
43177 CGTT
1 CGTT
43181 ACGAATCTAG
Statistics
Matches: 34, Mismatches: 8, Indels: 6
0.71 0.17 0.12
Matches are distributed among these distances:
19 3 0.09
20 16 0.47
21 12 0.35
22 3 0.09
ACGTcount: A:0.23, C:0.18, G:0.25, T:0.34
Consensus pattern (20 bp):
CGTTGCGATAGTCAAAATCG
Found at i:43234 original size:19 final size:19
Alignment explanation
Indices: 43210--43246 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
43200 TACGATACTG
* *
43210 GAGATCGCGTTGTGATTTA
1 GAGATCGCATTGCGATTTA
43229 GAGATCGCATTGCGATTT
1 GAGATCGCATTGCGATTT
43247 TGTTGGTCAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.22, C:0.14, G:0.30, T:0.35
Consensus pattern (19 bp):
GAGATCGCATTGCGATTTA
Found at i:49262 original size:18 final size:18
Alignment explanation
Indices: 49241--49293 Score: 58
Period size: 19 Copynumber: 3.1 Consensus size: 18
49231 TTTTTGAAAT
49241 TTTTATTTTTAAATAAAA
1 TTTTATTTTTAAATAAAA
49259 TTTTTATTTTTAAA-AAAA
1 -TTTTATTTTTAAATAAAA
**
49277 CATT-TTTTT-AATAAAA
1 TTTTATTTTTAAATAAAA
49293 T
1 T
49294 ATCATAATAC
Statistics
Matches: 30, Mismatches: 3, Indels: 5
0.79 0.08 0.13
Matches are distributed among these distances:
15 2 0.07
16 9 0.30
17 2 0.07
18 4 0.13
19 13 0.43
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (18 bp):
TTTTATTTTTAAATAAAA
Found at i:49269 original size:20 final size:19
Alignment explanation
Indices: 49237--49283 Score: 76
Period size: 19 Copynumber: 2.4 Consensus size: 19
49227 ATAATTTTTG
*
49237 AAATTTTTATTTTTAAATA
1 AAATTTTTATTTTTAAAAA
49256 AAATTTTTATTTTTAAAAA
1 AAATTTTTATTTTTAAAAA
49275 AACATTTTT
1 AA-ATTTTT
49284 TTAATAAAAT
Statistics
Matches: 26, Mismatches: 1, Indels: 1
0.93 0.04 0.04
Matches are distributed among these distances:
19 20 0.77
20 6 0.23
ACGTcount: A:0.43, C:0.02, G:0.00, T:0.55
Consensus pattern (19 bp):
AAATTTTTATTTTTAAAAA
Found at i:49495 original size:30 final size:30
Alignment explanation
Indices: 49416--49488 Score: 146
Period size: 30 Copynumber: 2.4 Consensus size: 30
49406 CTCCATTATC
49416 GGGATTAAATCCCAGTATGATGCCCTTGAA
1 GGGATTAAATCCCAGTATGATGCCCTTGAA
49446 GGGATTAAATCCCAGTATGATGCCCTTGAA
1 GGGATTAAATCCCAGTATGATGCCCTTGAA
49476 GGGATTAAATCCC
1 GGGATTAAATCCC
49489 GATATGAACC
Statistics
Matches: 43, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
30 43 1.00
ACGTcount: A:0.30, C:0.21, G:0.23, T:0.26
Consensus pattern (30 bp):
GGGATTAAATCCCAGTATGATGCCCTTGAA
Found at i:52771 original size:30 final size:30
Alignment explanation
Indices: 52737--52820 Score: 159
Period size: 30 Copynumber: 2.8 Consensus size: 30
52727 CGGTAGTTAT
52737 TTAAACTGATTCATTAATTTAAATAACTAC
1 TTAAACTGATTCATTAATTTAAATAACTAC
*
52767 TTAAACTGATTCATTAATTTAGATAACTAC
1 TTAAACTGATTCATTAATTTAAATAACTAC
52797 TTAAACTGATTCATTAATTTAAAT
1 TTAAACTGATTCATTAATTTAAAT
52821 CCCGCGTTTC
Statistics
Matches: 52, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 52 1.00
ACGTcount: A:0.42, C:0.12, G:0.05, T:0.42
Consensus pattern (30 bp):
TTAAACTGATTCATTAATTTAAATAACTAC
Found at i:53971 original size:17 final size:17
Alignment explanation
Indices: 53949--53987 Score: 69
Period size: 17 Copynumber: 2.3 Consensus size: 17
53939 TAATCTACCG
53949 ATGTTGAAAACATTTTC
1 ATGTTGAAAACATTTTC
*
53966 ATGTTGAAAACATTTTG
1 ATGTTGAAAACATTTTC
53983 ATGTT
1 ATGTT
53988 TCGATATAAC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
17 21 1.00
ACGTcount: A:0.33, C:0.08, G:0.15, T:0.44
Consensus pattern (17 bp):
ATGTTGAAAACATTTTC
Found at i:54386 original size:65 final size:65
Alignment explanation
Indices: 54266--54414 Score: 176
Period size: 65 Copynumber: 2.3 Consensus size: 65
54256 TTTCAAATAC
* * * * ***
54266 AATTTATGCACCGATGCAC-AGGCATGCATCGATGCACTCTGGATTTTATTAAAACATCGAATTG
1 AATTTGTGCACCGATGCACAAGCCATGCATCGATGCACCCAGGATTTTATTAAAACATCGAAGCA
* * *
54330 ATTTTGTGCACCGATGCACAAGCCATGCATCGATGCACCCAGGCTATTT-TTGAAACATCGAAGC
1 AATTTGTGCACCGATGCACAAGCCATGCATCGATGCACCCAGGAT-TTTATTAAAACATCGAAGC
54394 A
65 A
*
54395 AATTTGTGCACTGATGCACA
1 AATTTGTGCACCGATGCACA
54415 CCCTAGTGTA
Statistics
Matches: 71, Mismatches: 12, Indels: 3
0.83 0.14 0.03
Matches are distributed among these distances:
64 17 0.24
65 51 0.72
66 3 0.04
ACGTcount: A:0.30, C:0.23, G:0.19, T:0.28
Consensus pattern (65 bp):
AATTTGTGCACCGATGCACAAGCCATGCATCGATGCACCCAGGATTTTATTAAAACATCGAAGCA
Found at i:55113 original size:17 final size:19
Alignment explanation
Indices: 55085--55133 Score: 57
Period size: 19 Copynumber: 2.6 Consensus size: 19
55075 TATTTTGAAA
55085 CATCGAATGCACT-TGA-TG
1 CATCG-ATGCACTCTGAGTG
*
55103 CATCGATGCACTCTTAGTG
1 CATCGATGCACTCTGAGTG
*
55122 CACCGATGCACT
1 CATCGATGCACT
55134 AAGGGTCCAA
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
17 7 0.26
18 7 0.26
19 13 0.48
ACGTcount: A:0.24, C:0.29, G:0.20, T:0.27
Consensus pattern (19 bp):
CATCGATGCACTCTGAGTG
Found at i:57913 original size:16 final size:15
Alignment explanation
Indices: 57882--57920 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
57872 ACTATCCATA
*
57882 AATCCAAAATCCAAC
1 AATCCAAAATCAAAC
57897 AATCCACAAATCAAAC
1 AATCCA-AAATCAAAC
*
57913 AATTCAAA
1 AATCCAAA
57921 TGTTGAAACA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.56, C:0.28, G:0.00, T:0.15
Consensus pattern (15 bp):
AATCCAAAATCAAAC
Found at i:59888 original size:21 final size:21
Alignment explanation
Indices: 59862--59901 Score: 62
Period size: 21 Copynumber: 1.9 Consensus size: 21
59852 CAGAACCCCA
*
59862 GGGGGGTATCGATTCCCCTGT
1 GGGGGGAATCGATTCCCCTGT
*
59883 GGGGGGAATCGGTTCCCCT
1 GGGGGGAATCGATTCCCCT
59902 TCAAAGGGGG
Statistics
Matches: 17, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
21 17 1.00
ACGTcount: A:0.10, C:0.25, G:0.40, T:0.25
Consensus pattern (21 bp):
GGGGGGAATCGATTCCCCTGT
Found at i:63782 original size:22 final size:21
Alignment explanation
Indices: 63740--63779 Score: 55
Period size: 21 Copynumber: 1.9 Consensus size: 21
63730 AGTTTGTTTT
*
63740 TCATTTTTCAATTTTGAAACA
1 TCATTTTTCAATTTTAAAACA
63761 TCATTTTT-ATATTTTAAAA
1 TCATTTTTCA-ATTTTAAAA
63780 ACAATTTCTC
Statistics
Matches: 17, Mismatches: 1, Indels: 2
0.85 0.05 0.10
Matches are distributed among these distances:
20 1 0.06
21 16 0.94
ACGTcount: A:0.35, C:0.10, G:0.03, T:0.53
Consensus pattern (21 bp):
TCATTTTTCAATTTTAAAACA
Done.