genome.fa.s2015.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002015.1 Hibiscus syriacus cultivar Beakdansim tig00004115_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67836

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59--130	23	3.2	23	84	2	83	38	22	2	36	1.69
483--546	23	2.8	22	86	6	92	40	21	3	34	1.69
482--554	23	3.2	22	82	5	83	39	21	2	35	1.68
902--973	23	3.2	22	84	4	90	40	20	4	34	1.72
1--1585	419	3.8	424	92	5	2639	38	12	8	40	1.72
4191--4667	180	2.6	183	93	1	800	32	17	15	34	1.91
6556--6612	3	19.0	3	77	0	60	24	33	7	35	1.82
6578--6629	24	2.2	24	92	0	86	19	32	9	38	1.84
6556--6616	12	5.1	12	85	0	68	24	32	8	34	1.85
6582--6624	12	3.6	12	87	0	68	18	34	11	34	1.87
6578--6629	6	8.7	6	78	0	50	19	32	9	38	1.84
8057--9424	200	6.9	200	97	1	2560	30	17	15	36	1.91
11356--11421	33	2.0	33	87	0	96	22	46	0	30	1.52
11455--11519	21	3.1	21	90	0	94	16	29	10	43	1.82
13533--13584	24	2.2	24	82	6	61	26	7	13	51	1.67
13724--13766	20	2.3	18	85	14	61	20	16	11	51	1.75
13729--13789	20	3.1	19	79	9	68	18	14	11	55	1.68
13910--13956	20	2.3	20	89	10	78	17	17	10	55	1.69
13696--14168	181	2.6	182	91	1	734	26	17	13	42	1.86
14867--14891	11	2.3	11	100	0	50	32	8	24	36	1.84
15045--15596	182	3.0	180	90	2	811	43	11	16	28	1.84
16057--16216	87	1.8	87	94	0	284	28	16	13	41	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17549--17594	23	2.0	23	86	0	65	41	0	0	58	0.98
17652--17693	19	2.2	19	83	8	50	40	4	0	54	1.21
17854--17895	19	2.2	19	86	0	57	33	28	16	21	1.95
17907--17993	21	4.1	21	86	4	122	26	25	14	33	1.95
17957--18063	20	5.5	19	75	12	76	26	23	15	34	1.95
18030--18062	17	1.9	17	93	0	57	27	18	12	42	1.85
18894--18960	22	3.0	22	100	0	134	26	26	26	19	1.99
19160--19237	30	2.6	29	80	8	84	35	20	8	34	1.84
19251--19322	29	2.5	29	90	0	108	37	12	11	38	1.79
19625--19775	68	2.2	67	87	5	207	14	27	27	30	1.95
19755--19797	21	2.0	21	86	0	59	16	25	27	30	1.97
25833--25899	22	3.0	22	95	0	125	28	26	25	19	1.99
26100--26177	30	2.6	29	80	8	84	35	20	8	34	1.84
26191--26262	29	2.5	29	90	0	108	37	12	11	38	1.79
26566--26717	68	2.2	68	87	4	209	14	27	27	30	1.95
26697--26739	21	2.0	21	86	0	59	16	25	27	30	1.97
30448--30488	12	3.4	12	86	0	55	56	21	2	19	1.54
30447--30481	6	5.8	6	86	0	52	60	20	2	17	1.49
30690--30750	29	2.1	29	90	0	95	31	29	16	22	1.96
30734--30778	20	2.2	20	88	0	72	22	17	22	37	1.94
30837--30987	64	2.4	64	92	1	241	52	17	1	28	1.55
30968--30998	14	2.3	14	94	5	55	48	19	0	32	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32360--32430	21	3.5	20	83	9	81	23	16	33	25	1.96
32360--32461	41	2.5	42	80	4	109	26	17	33	22	1.96
32601--32642	12	3.5	12	83	6	50	66	7	0	26	1.17
34980--35025	22	2.1	22	83	0	56	23	17	39	19	1.92
35163--35211	20	2.5	20	79	0	62	22	12	18	46	1.82
43628--43680	14	4.1	14	74	18	51	60	16	11	11	1.59
43980--44246	20	12.9	20	73	10	198	38	25	18	17	1.92
44039--44254	42	5.2	42	94	1	355	37	25	18	18	1.93
43984--44254	84	3.3	84	86	5	358	38	25	18	17	1.92
44350--44417	6	11.5	6	96	1	120	30	52	16	0	1.43
44898--44959	6	11.0	6	96	1	87	0	17	54	27	1.43
45058--45222	20	8.1	20	75	10	138	18	18	21	40	1.91
45065--45325	40	6.4	40	81	11	284	17	18	22	41	1.90
45235--45288	20	2.7	20	94	0	99	9	18	20	51	1.73
45275--45326	19	2.7	19	90	3	77	15	17	25	42	1.88
50102--50321	117	1.9	117	82	1	280	31	30	15	22	1.94
51242--51449	29	7.2	28	76	9	125	48	16	2	32	1.59
51457--51499	18	2.4	18	84	0	59	18	25	41	13	1.88
53874--53902	15	1.9	15	100	0	58	34	6	6	51	1.55
59133--59180	24	2.0	24	100	0	96	33	4	29	33	1.77
62117--62153	2	18.5	2	94	0	65	51	2	0	45	1.15

Tables:   1

The End!