genome.fa.s2016.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002016.1 Hibiscus syriacus cultivar Beakdansim tig00004116_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133746

Tables:   1   

This is table  1  of  1  ( 60 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5876--5926	26	2.0	26	88	0	75	19	11	33	35	1.88
20519--20568	12	4.3	12	72	10	50	48	2	0	50	1.12
20533--20897	22	16.6	22	87	4	486	43	0	7	48	1.31
20920--20979	31	1.9	31	86	6	86	48	6	3	41	1.46
24968--25092	31	4.0	31	91	2	198	36	21	20	21	1.95
25270--25316	23	2.0	24	91	4	78	36	19	0	44	1.51
25919--25959	21	2.0	21	85	0	55	17	24	29	29	1.97
28719--28843	31	4.0	31	91	2	198	36	21	20	21	1.95
29021--29067	23	2.0	24	91	4	78	36	19	0	44	1.51
30591--31149	111	5.0	111	91	1	845	30	17	22	30	1.96
30591--31149	220	2.5	222	90	1	863	30	17	22	30	1.96
32317--32364	23	2.1	22	85	11	62	4	16	0	79	0.89
32317--32364	22	2.1	23	84	3	62	4	16	0	79	0.89
39545--39574	11	2.7	11	89	0	51	46	10	20	23	1.80
45740--45767	2	14.0	2	100	0	56	50	0	50	0	1.00
49373--49440	35	1.9	35	84	0	91	44	22	1	32	1.62
50965--51018	28	1.9	28	84	0	72	33	1	1	62	1.16
52311--52447	57	2.4	58	88	2	213	34	18	11	35	1.88
53201--53243	21	2.0	21	100	0	86	32	0	0	67	0.91
55086--55216	3	42.7	3	86	7	183	35	0	1	62	1.05
55929--55957	13	2.2	13	100	0	58	0	31	62	6	1.22
61905--61944	10	3.8	11	83	12	57	85	0	15	0	0.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61905--61939	11	3.3	10	92	8	52	85	0	14	0	0.59
61909--61942	17	2.0	17	88	11	52	88	0	11	0	0.52
61913--61942	13	2.4	12	89	10	51	90	0	10	0	0.47
61909--61952	16	2.7	16	85	3	52	81	0	18	0	0.68
65974--66085	54	2.1	54	82	0	134	41	16	19	23	1.90
66446--66525	22	3.6	22	70	0	70	36	12	11	40	1.79
67039--67521	76	6.4	76	96	1	884	21	20	20	37	1.95
67039--67521	150	3.2	151	96	1	882	21	20	20	37	1.95
67039--67521	226	2.1	225	96	1	878	21	20	20	37	1.95
67647--67761	3	38.7	3	83	11	148	36	0	1	61	1.06
68476--68504	13	2.2	13	100	0	58	0	31	62	6	1.22
71587--71637	25	2.1	24	85	10	68	43	3	5	47	1.46
81225--81300	30	2.5	31	84	6	100	51	0	0	48	1.00
81319--81353	12	2.9	12	95	0	61	28	51	11	8	1.67
92012--92042	2	16.0	2	93	6	55	51	0	0	48	1.00
92142--92186	23	2.0	23	81	0	54	35	15	13	35	1.87
104133--104361	20	11.4	20	81	5	230	37	25	17	19	1.94
105053--105099	24	2.0	24	87	8	69	25	14	21	38	1.92
107532--107575	21	2.0	22	83	12	56	50	0	6	43	1.29
108424--108480	20	2.8	21	72	5	71	47	15	22	14	1.82
108497--108551	14	3.6	14	73	21	56	9	25	23	41	1.83
108481--108551	33	2.2	33	94	0	124	8	22	25	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108492--108573	33	2.5	33	89	2	119	10	24	21	42	1.85
108508--108583	20	4.2	19	71	19	72	11	25	18	44	1.83
108537--108593	20	2.8	20	81	2	69	14	26	17	42	1.87
108676--108732	14	3.7	14	72	20	51	43	21	24	10	1.83
108672--108742	33	2.2	33	97	0	133	46	18	23	11	1.81
109119--109273	20	7.7	20	88	4	240	20	19	27	32	1.97
109118--109311	40	4.8	40	85	4	239	19	19	26	35	1.95
109119--109311	60	3.2	60	83	5	246	19	19	26	34	1.95
110598--110677	30	2.7	30	90	1	126	37	7	13	41	1.73
110741--110806	19	3.5	18	85	6	78	37	10	15	36	1.82
110915--110956	21	2.0	21	100	0	84	23	19	28	28	1.98
110985--111024	20	1.9	21	85	10	55	37	37	10	15	1.80
115746--115834	42	2.1	42	100	0	178	29	31	20	19	1.97
124593--124711	59	2.0	59	98	0	229	32	15	19	32	1.93
125541--125569	12	2.5	12	94	5	51	27	0	10	62	1.28
125522--125673	75	2.0	75	82	5	182	28	5	13	52	1.61

Tables:   1

The End!