genome.fa.s2017.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002017.1 Hibiscus syriacus cultivar Beakdansim tig00004121_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58488

Tables:   1   

This is table  1  of  1  ( 52 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6304--6496	60	3.2	60	89	1	280	27	16	19	36	1.93
6404--6496	31	3.1	31	60	12	75	22	18	21	37	1.94
6616--6746	58	2.2	58	85	6	167	33	16	17	32	1.93
8152--8211	25	2.4	25	80	0	66	50	18	10	21	1.76
12290--12353	27	2.4	27	78	0	74	42	3	45	9	1.52
20523--20557	16	2.3	16	90	9	56	37	0	8	54	1.31
23344--23379	15	2.5	14	82	8	54	44	2	5	47	1.41
25583--25702	42	2.9	42	96	0	213	16	20	18	45	1.86
25891--25951	22	2.8	23	82	7	65	47	0	0	52	1.00
25967--26065	29	3.5	28	79	15	89	43	1	2	53	1.19
25979--26025	24	2.0	23	83	4	58	40	0	2	57	1.11
25992--26065	28	2.7	26	78	17	78	40	1	1	56	1.16
26229--26298	20	3.5	20	92	0	122	37	14	8	40	1.76
26281--26362	15	5.5	15	86	2	112	36	18	7	37	1.79
26281--26362	30	2.8	30	92	1	130	36	18	7	37	1.79
26281--26367	45	2.0	44	90	2	138	34	18	6	40	1.77
27176--27211	10	3.4	10	85	14	54	58	8	2	30	1.42
28485--28536	20	2.6	20	96	0	95	38	26	13	21	1.90
28526--28624	21	4.8	20	72	6	72	36	22	19	22	1.95
28592--28785	20	9.6	20	76	8	76	35	25	19	19	1.95
28592--28785	40	4.8	39	82	3	199	35	25	19	19	1.95
28592--28784	60	3.2	60	83	0	251	35	25	19	19	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29163--29233	33	2.2	33	92	0	115	11	22	18	47	1.80
29354--29408	14	3.6	14	73	21	56	41	23	25	9	1.83
29354--29424	33	2.2	33	94	0	124	43	25	22	8	1.81
29420--29517	19	5.7	19	70	22	81	10	24	22	42	1.84
29442--29531	14	5.7	14	74	23	81	8	25	23	42	1.83
29425--29539	33	3.5	33	95	0	212	9	24	20	45	1.81
31237--31801	185	3.0	186	98	0	1098	22	12	18	46	1.83
31237--31801	93	6.1	93	98	0	1098	22	12	18	46	1.83
31237--31803	278	2.0	278	98	0	1116	22	12	18	46	1.83
31845--31973	19	7.3	19	75	17	125	45	28	17	8	1.77
31881--31973	33	2.8	32	91	4	150	46	27	18	7	1.76
31845--31973	52	2.5	52	74	14	140	45	28	17	8	1.77
31969--32068	19	5.8	18	74	21	99	11	21	21	47	1.81
31991--32047	14	3.7	14	77	20	60	10	21	22	45	1.82
31974--32066	33	2.8	33	95	0	168	10	20	21	47	1.80
31969--32084	19	6.6	19	70	19	72	12	19	22	45	1.83
33987--34022	14	2.6	14	95	0	63	33	0	22	44	1.53
34129--34230	19	5.6	19	84	13	151	44	17	23	14	1.86
34259--34551	19	16.4	19	83	14	392	14	20	18	47	1.83
34237--34551	52	5.9	52	87	9	330	14	20	18	46	1.83
34259--34523	128	2.1	122	84	12	194	14	21	16	47	1.83
36832--36856	12	2.1	12	100	0	50	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37031--37077	24	2.0	24	87	8	69	38	21	14	25	1.92
37760--38128	20	18.5	20	86	5	451	20	18	26	34	1.96
41846--41872	13	2.1	13	100	0	54	22	25	14	37	1.93
44225--44268	23	1.9	23	95	0	79	15	29	27	27	1.96
44387--44429	18	2.4	18	96	0	77	25	20	32	20	1.97
45103--45143	21	2.0	21	95	0	73	26	26	24	21	2.00
53436--53504	36	1.9	36	91	5	113	20	2	24	52	1.60
55911--55979	20	3.4	19	75	11	66	50	1	4	43	1.30

Tables:   1

The End!