Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002019.1 Hibiscus syriacus cultivar Beakdansim tig00004123_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  98956

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
334--364
16
1.9
16
93
0
53
35
29
3
32
1.73
8653--8703
24
2.2
24
96
3
95
29
1
7
60
1.36
10297--10329
15
2.1
16
94
5
59
60
0
0
39
0.97
10289--10340
17
3.2
16
78
15
54
59
0
0
40
0.97
22202--22238
16
2.3
16
90
9
58
72
0
27
0
0.84
26773--26806
2
17.0
2
100
0
68
50
0
0
50
1.00
33141--33166
2
13.0
2
100
0
52
50
0
0
50
1.00
39521--39553
6
5.5
6
96
0
57
39
12
0
48
1.40
41550--41626
37
2.1
37
85
4
102
48
1
3
46
1.28
47509--47534
2
13.0
2
100
0
52
50
0
0
50
1.00
48928--48954
3
9.0
3
100
0
54
66
0
0
33
0.92
54241--54293
2
26.5
2
96
0
97
49
1
0
49
1.12
55776--55832
23
2.5
22
78
13
62
43
0
3
52
1.18
66099--66190
32
2.9
32
95
1
159
51
17
5
26
1.67
66286--66462
31
5.3
31
66
15
111
49
12
12
24
1.76
66278--66480
68
3.0
68
95
0
370
48
13
12
25
1.78
66307--66431
37
3.5
36
69
14
107
47
13
13
25
1.80
75127--75153
2
13.5
2
100
0
54
48
0
0
51
1.00
77039--77075
4
9.2
4
93
0
65
51
21
0
27
1.48
77045--77105
4
15.2
4
96
0
68
50
9
0
39
1.35
81105--81164
21
2.9
21
70
20
63
60
5
0
35
1.19
81120--81180
18
3.3
17
80
17
68
59
4
0
36
1.19
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
81161--81224
28
2.3
26
76
12
65
56
1
3
39
1.25
81493--81548
21
2.6
22
86
11
80
32
0
3
64
1.11
83456--83732
41
6.7
41
74
7
229
27
22
18
31
1.97
83472--83538
21
3.2
21
68
4
55
32
23
19
23
1.97
83546--83682
20
6.7
20
72
9
87
21
20
21
35
1.96
83556--83600
23
2.0
23
90
0
72
24
15
24
35
1.94
83493--83707
84
2.6
81
89
4
349
24
22
20
33
1.97
83639--83723
20
4.2
20
75
3
71
28
22
17
31
1.97
84183--84305
41
3.0
41
87
2
176
29
19
22
28
1.98
84183--84285
20
5.0
21
66
4
75
26
19
22
32
1.97
85766--85795
2
15.0
2
100
0
60
50
0
0
50
1.00
86433--86539
34
3.1
33
78
14
85
34
0
3
61
1.14
86466--86544
34
2.4
34
85
8
101
37
0
1
60
1.05
86686--86739
17
3.2
17
72
0
54
31
0
3
64
1.11
87339--87450
35
3.2
35
88
0
161
35
0
23
41
1.55

Tables:   1

The End!