Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000202.1 Hibiscus syriacus cultivar Beakdansim tig00000361_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90952

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3685--3728
23
1.9
23
90
0
70
34
18
6
40
1.77
4048--4122
31
2.4
31
90
0
123
18
9
16
56
1.66
4601--4668
28
2.4
29
97
2
129
57
14
8
19
1.63
4601--4680
28
2.8
28
90
1
124
61
13
7
17
1.55
8750--8793
13
3.4
13
80
0
52
68
13
2
15
1.31
11041--11074
9
3.9
9
84
7
52
64
2
0
32
1.08
12158--12195
20
1.9
20
84
10
51
42
2
0
55
1.14
13139--13185
22
2.1
22
100
0
94
12
12
29
44
1.80
19544--19572
14
2.1
14
93
6
51
72
0
0
27
0.85
19519--19574
23
2.3
26
76
20
66
62
3
0
33
1.12
20161--20188
2
14.0
2
100
0
56
50
0
0
50
1.00
20202--20265
15
4.5
14
73
21
53
29
0
3
67
1.06
20210--20255
22
2.1
21
88
4
65
23
0
4
71
1.03
21500--21611
40
2.8
40
90
0
179
45
16
10
26
1.81
33054--33137
32
2.6
32
83
12
102
22
22
17
36
1.94
33972--34028
26
2.2
26
78
6
62
19
7
7
66
1.39
34568--34601
17
2.0
17
88
0
50
58
0
0
41
0.98
35490--35543
25
2.2
25
100
0
108
20
14
35
29
1.93
37074--37478
201
2.0
201
91
0
650
49
5
19
25
1.71
39194--39258
23
2.8
23
80
0
85
32
23
24
20
1.98
40666--40723
20
2.6
22
89
10
84
25
22
20
31
1.98
40714--40871
64
2.5
62
80
5
181
25
25
15
32
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43698--43739
21
2.0
21
85
0
57
21
0
45
33
1.52
43699--43752
24
2.2
24
83
6
74
18
1
46
33
1.60
56547--56839
144
2.0
144
97
0
559
45
5
12
36
1.66
62244--62301
23
2.5
22
76
17
64
41
8
12
37
1.73
76829--76906
24
3.2
24
96
0
147
28
3
25
42
1.72
80700--80739
20
2.0
21
90
5
64
35
27
5
32
1.79
81592--81759
83
2.0
83
100
0
336
35
19
9
36
1.84
81801--81848
25
1.9
25
100
0
96
35
25
0
39
1.56
81990--82054
30
2.2
29
86
2
85
29
21
9
40
1.84
83213--83313
51
2.0
49
92
3
166
30
19
21
27
1.98
83374--83424
22
2.3
22
96
0
93
37
9
19
33
1.85
88690--88722
2
16.5
2
100
0
66
48
0
0
51
1.00

Tables:   1

The End!