genome.fa.s2020.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002020.1 Hibiscus syriacus cultivar Beakdansim tig00004127_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79298

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
374--487	23	5.0	23	80	6	133	30	23	21	23	1.99
374--493	46	2.6	47	90	3	183	31	22	20	25	1.98
512--710	100	2.0	102	92	3	339	35	23	13	27	1.92
8226--8273	19	2.5	19	93	0	78	33	18	29	18	1.95
8906--8982	38	2.0	38	89	0	118	22	18	29	29	1.97
8909--8981	18	3.9	18	78	7	83	20	17	31	30	1.96
22511--22567	30	1.9	30	82	7	71	45	3	3	47	1.37
24865--24978	20	5.7	20	83	6	113	31	25	18	24	1.97
24862--24978	61	1.9	61	85	0	162	33	24	17	23	1.97
28021--28061	21	1.9	22	85	5	57	39	0	34	26	1.57
29786--29828	19	2.3	19	87	0	59	20	27	37	13	1.91
30665--31154	137	3.6	136	80	8	478	28	12	13	45	1.79
31688--31844	21	7.6	21	74	14	114	33	22	20	22	1.97
31708--31823	41	2.8	41	89	2	171	36	20	19	23	1.95
31853--31969	41	2.9	42	83	5	134	23	21	21	33	1.97
31685--31884	62	3.2	60	77	10	199	33	22	20	24	1.97
31853--31966	21	5.6	21	75	10	110	23	21	21	32	1.98
31869--31928	20	3.0	20	79	13	77	23	21	20	35	1.96
32591--32623	5	6.4	5	96	3	57	0	21	57	21	1.41
32720--32994	21	12.8	21	80	9	279	40	18	18	22	1.92
32720--32994	42	6.4	43	87	3	346	40	18	18	22	1.92
32720--33003	130	2.2	127	90	3	421	40	19	18	22	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39996--40081	20	4.3	19	70	15	57	77	2	13	5	1.04
40033--40075	9	4.6	9	80	11	50	81	0	13	4	0.84
40038--40075	20	1.9	20	88	0	58	78	0	15	5	0.91
42296--42322	14	1.9	14	100	0	54	37	3	0	59	1.15
43448--43785	133	2.5	134	82	3	387	30	19	20	29	1.97
47556--47594	20	2.0	20	89	0	60	33	10	23	33	1.88
48429--48467	21	1.9	20	84	5	51	10	0	20	69	1.17
53938--53979	12	3.7	12	78	12	52	35	19	26	19	1.95
53937--53979	22	2.0	22	95	0	77	37	18	25	18	1.94
54608--54747	31	4.5	31	90	0	208	40	21	17	20	1.91
62603--62643	19	2.2	19	86	0	55	26	26	31	14	1.95
67427--67454	2	14.0	2	100	0	56	50	0	0	50	1.00
69901--70574	182	3.7	182	92	0	1051	40	14	16	28	1.87
72914--72957	21	2.1	21	100	0	88	38	13	34	13	1.84
75765--76441	200	3.4	196	83	6	794	39	13	15	31	1.86
76489--76611	64	1.9	63	90	1	192	34	10	11	43	1.75

Tables:   1

The End!