genome.fa.s2022.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002022.1 Hibiscus syriacus cultivar Beakdansim tig00004131_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86359

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3387--3431	20	2.2	20	88	0	63	15	13	15	55	1.69
3515--3561	23	2.1	23	88	4	69	29	10	23	36	1.89
4162--4202	19	2.1	20	86	4	57	60	0	9	29	1.28
4632--4681	26	1.9	26	87	0	73	24	22	18	36	1.95
5499--5537	16	2.4	16	91	0	60	33	17	28	20	1.96
6084--6116	16	2.1	16	100	0	66	39	18	6	36	1.75
10906--10932	7	3.9	7	100	0	54	29	14	0	55	1.40
13567--13619	25	2.1	25	89	0	79	37	7	20	33	1.81
14821--14856	18	1.9	19	94	5	65	61	0	2	36	1.11
15373--15432	16	3.8	15	77	20	52	48	6	0	45	1.29
18455--18495	17	2.7	14	80	20	55	46	34	14	4	1.66
19045--19081	3	12.3	3	100	0	74	67	0	0	32	0.91
19927--20153	57	4.0	57	87	4	289	33	6	9	50	1.61
21457--21538	7	11.7	7	81	14	73	52	25	0	21	1.47
21458--21538	28	2.9	28	83	7	94	51	25	0	22	1.48
23382--23420	11	3.5	11	85	0	60	30	5	23	41	1.76
23492--23557	20	3.3	20	86	0	105	24	6	9	60	1.49
23751--23796	24	1.9	24	91	8	76	69	4	2	23	1.17
23826--24215	206	1.9	205	89	3	615	24	19	22	33	1.97
24525--24556	13	2.5	13	94	0	55	12	6	3	78	1.06
26311--26375	20	3.5	18	84	11	62	26	24	9	40	1.85
26328--26401	20	3.7	20	92	0	112	28	25	5	40	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
27462--27616	4	38.5	4	65	24	51	71	1	3	23	1.08
27460--27497	20	1.9	20	94	0	67	76	0	2	21	0.91
27447--27611	25	6.7	25	67	22	66	70	1	4	24	1.12
27403--27533	57	2.3	58	80	10	137	72	1	6	19	1.15
27474--27563	37	2.6	35	79	19	84	73	0	4	22	1.01
27516--27589	30	2.5	29	78	18	80	68	1	2	27	1.10
27479--27629	38	4.0	38	74	15	116	68	1	3	25	1.15
27470--27599	32	3.9	34	76	10	108	71	0	3	23	1.07
27537--27626	35	2.5	35	78	10	101	66	3	1	28	1.14
28177--28288	37	3.0	37	96	0	197	32	13	14	40	1.84
28783--29038	83	3.1	84	82	3	277	23	18	23	34	1.96
29104--29340	36	6.7	36	75	16	165	38	13	21	25	1.91
29138--29324	102	1.8	102	84	6	254	39	13	20	27	1.90
30552--30640	32	2.8	32	82	3	117	38	21	10	30	1.86
31673--31723	12	4.0	13	78	12	52	0	17	7	74	1.05
34915--35032	30	3.7	31	72	16	82	69	1	0	27	1.04
34875--34992	18	6.9	16	72	18	69	72	0	3	23	1.06
34920--35047	42	3.2	40	79	9	111	66	3	0	29	1.12
34862--34987	65	1.9	66	80	7	150	71	0	3	23	1.08
35600--35711	37	3.0	37	93	0	188	31	14	14	40	1.86
43281--43368	45	2.0	45	86	0	122	30	25	23	20	1.98
45709--45937	36	6.0	41	70	22	137	47	3	5	43	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45749--45942	108	1.8	110	87	5	299	46	4	5	43	1.44
45903--45959	29	2.0	29	92	0	96	49	5	3	42	1.42
45904--45969	29	2.2	29	86	2	87	51	4	3	40	1.38
45867--45997	68	2.0	65	83	10	167	49	3	3	43	1.36
46024--46052	2	15.0	2	92	7	51	48	0	0	51	1.00
46127--46162	15	2.4	15	90	0	54	25	33	27	13	1.94
47362--47394	5	6.6	5	100	0	66	39	0	0	60	0.97
47406--47447	3	14.3	3	90	5	68	30	2	0	66	1.04
48487--48568	36	2.2	35	81	10	92	43	4	4	46	1.46
48565--48799	37	6.3	37	78	15	211	45	6	0	48	1.31
48449--48688	115	2.1	114	80	9	265	42	4	2	51	1.33
48606--48800	75	2.5	79	84	11	253	46	6	0	46	1.33
48601--48804	39	5.3	38	80	12	222	47	6	0	45	1.33
52620--52673	20	2.7	20	75	11	65	27	29	14	27	1.95
52697--52781	20	4.2	20	67	16	68	38	21	18	21	1.93
52652--52766	41	2.8	41	79	8	103	33	20	17	28	1.96
52914--52960	22	2.1	22	88	0	67	21	42	12	23	1.87
53234--53317	40	2.1	40	97	0	159	29	19	14	36	1.91
53296--53344	21	2.4	21	93	3	82	12	20	20	46	1.82
53298--53344	20	2.3	21	92	3	78	12	19	19	48	1.80
53312--53355	20	2.2	20	83	0	52	15	18	18	47	1.83
55559--55614	21	2.7	21	80	5	69	19	37	25	17	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57211--57253	20	2.2	20	95	0	77	13	16	25	44	1.85
57427--57513	39	2.2	39	93	0	147	18	13	19	48	1.81
57757--57814	25	2.3	25	96	0	107	43	20	8	27	1.81
57904--57960	20	2.8	20	94	0	96	36	21	21	21	1.95
58284--58319	18	2.0	18	94	0	63	16	2	25	55	1.55
60370--60409	3	13.3	3	100	0	80	0	35	0	65	0.93
60763--60796	12	2.8	12	90	0	50	14	0	29	55	1.40
61440--61479	20	2.0	21	85	14	57	42	5	7	45	1.54
61690--61728	19	2.1	19	95	0	69	20	38	15	25	1.92
61676--61838	65	2.5	65	85	3	222	30	26	15	26	1.96
62714--62802	19	4.6	19	90	2	133	26	11	22	39	1.88
62695--62802	38	2.8	38	81	5	101	27	11	22	38	1.88
62802--62860	20	3.0	20	82	0	82	18	13	22	45	1.84
62775--62877	40	2.5	43	79	16	121	21	15	21	41	1.89
62859--62897	20	2.0	20	94	0	69	23	15	23	38	1.92
62897--62963	21	3.2	21	91	4	100	40	17	25	16	1.90
66287--66449	77	2.1	77	84	5	204	39	11	14	34	1.81
66529--66765	81	3.0	76	75	14	232	35	10	17	36	1.85
67290--67438	77	1.9	77	86	5	212	33	16	9	40	1.81
67752--67785	17	1.9	18	88	5	52	41	14	2	41	1.61
67814--67850	20	1.9	19	89	10	58	45	10	24	18	1.81
73975--74047	36	2.0	36	97	0	137	34	24	15	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
76538--76760	111	2.0	111	100	0	446	38	8	16	36	1.80
76963--77000	20	1.9	20	88	0	58	60	5	23	10	1.50
77483--77536	28	2.0	27	85	3	72	51	1	1	44	1.22
77484--77542	28	2.1	27	81	3	64	49	5	1	44	1.34
78030--78074	22	2.1	22	87	4	65	42	8	2	46	1.47
78588--78710	64	1.9	63	88	1	183	44	11	9	34	1.73
78726--79446	198	3.6	198	83	6	874	30	15	14	39	1.87
82269--82312	21	2.1	21	100	0	88	13	34	13	38	1.84
84637--85297	179	3.7	179	89	3	949	28	16	14	40	1.88

Tables:   1

The End!