Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002026.1 Hibiscus syriacus cultivar Beakdansim tig00004138_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66975

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4575--4607
15
2.2
15
94
0
57
54
0
0
45
0.99
6262--6300
19
2.1
19
85
9
53
38
0
2
58
1.12
7185--7218
16
2.1
17
88
5
52
44
17
0
38
1.49
7859--7951
23
4.1
23
79
5
91
38
23
15
22
1.92
7873--8032
21
7.4
21
70
14
85
36
22
16
24
1.94
22276--22391
15
7.3
15
71
18
67
38
2
0
57
1.18
22278--22321
20
2.4
17
85
11
52
38
0
0
61
0.96
22311--22410
20
4.9
20
67
18
55
38
4
1
57
1.24
22358--22391
18
1.9
18
88
5
52
38
0
2
58
1.13
25632--25682
25
2.0
25
84
7
66
56
21
9
11
1.63
25663--25695
17
2.0
17
88
5
50
60
21
12
6
1.53
26726--26754
14
2.1
14
100
0
58
13
20
13
51
1.75
28510--28553
21
2.0
21
83
12
54
36
6
0
56
1.26
28691--28774
35
2.4
35
79
15
93
35
2
7
54
1.41
44415--44440
2
13.0
2
100
0
52
50
0
0
50
1.00
44557--44615
18
3.3
18
75
11
59
64
5
1
28
1.24
45612--45640
3
9.7
3
100
0
58
65
0
0
34
0.93
47190--47218
2
14.5
2
100
0
58
48
0
0
51
1.00
48955--49032
27
3.0
26
76
14
79
35
1
1
61
1.12
49180--49212
3
11.0
3
100
0
66
33
0
0
66
0.92
49648--50443
137
5.8
137
83
2
932
25
14
25
34
1.94
49653--50445
414
1.9
414
85
0
1093
25
15
24
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60336--60377
2
21.0
2
100
0
84
50
0
0
50
1.00
61369--61403
13
2.7
13
95
0
61
17
20
37
25
1.94
64813--64846
18
1.9
18
88
5
52
38
0
2
58
1.13
64808--64877
26
2.7
25
81
14
72
37
1
2
58
1.22
65040--65129
3
31.0
3
91
8
143
32
0
0
67
0.91
65852--66014
88
1.9
88
92
0
272
38
9
7
44
1.66

Tables:   1

The End!