genome.fa.s2028.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002028.1 Hibiscus syriacus cultivar Beakdansim tig00004140_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  88327

Tables:   1   

This is table  1  of  1  ( 59 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1710--1758	14	3.6	14	79	17	59	55	10	16	18	1.69
6444--6511	14	4.9	14	88	0	100	54	8	19	17	1.68
11832--11912	36	2.2	36	87	8	112	33	4	18	43	1.72
13106--13137	15	2.1	15	94	0	55	56	9	28	6	1.55
16259--16315	27	2.1	27	100	0	114	36	19	17	26	1.94
16455--16514	21	3.2	21	65	30	62	31	5	20	43	1.73
16420--16549	35	3.7	36	87	6	178	33	6	17	41	1.76
16420--16553	71	1.9	68	86	7	189	32	6	17	42	1.76
19674--19703	2	15.0	2	100	0	60	50	0	0	50	1.00
19905--19958	3	19.0	3	78	17	62	62	1	0	35	1.06
19905--19958	11	5.0	11	88	6	76	62	1	0	35	1.06
20193--20236	17	2.6	17	82	13	63	29	0	2	68	1.02
21377--21407	16	1.9	16	93	0	53	16	25	29	29	1.96
21571--21611	3	13.3	3	89	5	64	60	0	0	39	0.96
21808--22434	131	4.8	130	93	2	1051	32	19	18	30	1.95
22396--22985	45	12.8	46	96	0	877	31	20	23	24	1.98
23655--23733	22	3.6	22	91	0	131	37	13	16	31	1.88
30990--31077	46	1.9	46	93	4	151	29	18	12	39	1.87
31471--31564	30	3.2	30	72	16	79	65	1	5	27	1.20
31483--31583	29	3.4	30	72	14	84	63	0	3	31	1.19
31470--31586	59	2.1	54	82	10	137	64	0	5	29	1.21
31502--31559	28	2.2	26	81	6	62	62	1	3	32	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32247--32272	2	13.0	2	100	0	52	50	0	0	50	1.00
32468--32532	3	22.7	3	83	9	82	64	1	0	33	1.03
32464--32536	8	9.6	8	77	16	68	65	1	0	32	1.01
32472--32536	14	4.5	14	81	12	78	64	1	0	33	1.03
32464--32532	17	4.3	16	80	12	79	65	1	0	33	1.02
32464--32532	20	3.7	20	84	7	92	65	1	0	33	1.02
32461--32539	14	5.4	14	81	13	70	68	1	0	30	0.98
32768--32811	7	6.3	7	80	19	56	29	0	0	70	0.88
32767--32812	17	3.0	15	79	20	51	30	0	0	69	0.89
32768--32811	21	2.1	21	87	8	63	29	0	0	70	0.88
34115--34183	3	22.7	3	88	2	102	60	0	0	39	0.97
39873--40010	64	2.2	63	81	7	154	31	15	21	31	1.94
46612--46652	22	1.9	22	85	5	57	29	4	9	56	1.53
55494--55717	121	1.9	121	93	0	385	31	11	7	49	1.67
55300--55861	275	2.1	266	90	3	892	30	12	7	49	1.69
55652--55916	144	1.8	144	95	0	485	30	12	8	47	1.71
57260--57312	5	11.0	5	88	8	83	20	41	0	37	1.53
67782--67818	11	3.5	11	78	14	51	8	29	27	35	1.85
67780--67819	20	2.0	20	100	0	80	10	30	25	35	1.88
68960--69452	54	9.2	54	78	6	398	31	21	13	32	1.93
69064--69452	107	3.6	107	83	5	403	31	21	14	32	1.93
70611--70655	23	1.9	23	82	13	56	46	15	17	20	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70636--70733	40	2.5	39	81	8	117	44	11	19	24	1.83
70692--70959	37	7.0	37	74	9	166	42	11	20	25	1.86
70633--70980	39	9.0	38	76	9	226	42	12	19	26	1.86
72590--72706	60	2.0	60	81	3	137	35	7	29	28	1.85
72655--72770	30	3.8	29	78	10	108	34	8	24	32	1.86
74891--74987	30	3.2	30	63	23	76	47	13	8	30	1.72
76826--76886	26	2.3	26	97	0	113	29	14	39	16	1.88
78967--78991	11	2.3	11	100	0	50	48	0	0	52	1.00
78987--79114	3	42.7	3	98	0	247	65	0	0	33	0.98
79434--80328	225	4.0	226	94	1	1512	29	18	14	37	1.90
79434--80328	113	7.9	113	94	2	1512	29	18	14	37	1.90
81060--81699	83	7.7	83	96	1	1080	37	21	13	27	1.91
82444--82480	19	1.9	19	88	0	56	48	5	8	37	1.56
82828--82878	10	5.0	10	83	4	66	0	17	0	82	0.67
82827--82873	6	7.7	6	82	17	53	0	19	0	80	0.70

Tables:   1

The End!