genome.fa.s203.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000203.1 Hibiscus syriacus cultivar Beakdansim tig00000363_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124114

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
934--995	14	4.3	14	73	6	52	38	1	14	45	1.55
1109--1147	20	2.0	20	94	0	69	48	23	20	7	1.75
1141--1420	20	14.6	20	78	10	291	25	19	22	32	1.97
1408--1652	132	1.8	133	95	0	447	43	14	13	28	1.83
1712--1754	12	3.6	12	87	0	59	16	4	25	53	1.62
1719--1752	6	5.7	6	85	0	50	17	2	20	58	1.51
4002--4055	24	2.2	24	93	0	90	40	20	18	20	1.91
4869--5037	20	8.3	20	76	8	135	31	19	23	26	1.98
6149--6267	60	2.0	60	81	4	143	37	16	17	27	1.92
19776--19912	55	2.5	55	89	3	213	30	21	21	25	1.99
25579--25623	19	2.4	19	88	3	65	24	26	13	35	1.92
30352--30382	16	2.0	16	93	6	55	64	6	0	29	1.18
30822--30874	21	2.5	20	74	17	54	26	3	18	50	1.64
34695--34752	7	8.3	7	96	0	80	44	34	0	20	1.52
34698--34753	21	2.7	21	91	0	94	42	33	0	23	1.54
34833--34884	14	3.7	14	92	0	86	51	30	0	17	1.45
34811--34850	21	1.9	21	100	0	80	50	32	0	17	1.47
34826--34884	14	4.2	14	88	0	82	50	30	0	18	1.47
36758--36789	11	2.9	11	90	0	55	25	6	28	40	1.79
39756--40002	98	2.5	97	84	3	287	31	20	17	30	1.95
40025--40075	2	25.5	2	100	0	102	49	0	0	50	1.00
41106--41136	12	2.6	12	94	0	53	70	9	6	12	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41750--42223	236	2.0	236	99	0	939	41	14	17	26	1.88
47880--47911	15	2.1	15	94	0	55	37	9	6	46	1.61
50165--50207	19	2.2	19	83	8	50	39	6	9	44	1.64
64481--64563	30	2.7	32	86	3	116	32	21	13	32	1.92
66227--66284	31	1.9	30	85	3	80	46	8	10	34	1.69
68544--68640	37	2.6	37	86	0	140	31	12	15	40	1.84
68834--68870	13	3.0	12	92	4	56	24	13	32	29	1.93
69718--69870	50	3.0	51	95	1	272	45	18	1	34	1.61
71468--71511	20	2.3	19	81	11	54	22	25	6	45	1.77
73300--73325	7	3.7	7	100	0	52	42	0	57	0	0.98
74772--74895	4	29.0	4	71	12	68	29	2	4	63	1.25
74777--74842	18	3.6	18	81	4	78	28	3	3	65	1.23
74768--74895	26	4.8	26	72	11	107	30	2	3	63	1.25
74779--74892	34	3.4	34	70	14	94	30	2	4	62	1.28
78752--78817	33	2.0	33	93	0	114	40	19	10	28	1.85
78758--78833	33	2.3	33	86	4	109	36	18	14	30	1.91
82243--82301	14	4.3	14	72	24	54	76	6	15	1	1.07
82243--82294	25	2.1	24	86	10	70	76	5	15	1	1.05
82241--82321	41	2.0	39	86	9	110	75	4	14	4	1.14
84670--84781	37	3.1	37	90	2	190	26	24	12	36	1.91
84668--84776	36	3.0	36	91	1	182	26	23	12	36	1.91
84817--84867	15	3.3	15	71	28	52	23	11	17	47	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84796--84907	36	3.2	34	77	19	124	27	17	13	41	1.87
84909--84972	31	2.1	31	90	0	101	45	15	9	29	1.78
84979--85236	83	3.1	82	87	2	340	31	26	18	23	1.98
85682--85762	33	2.5	33	89	0	117	40	18	12	28	1.87
87318--87355	19	2.0	20	94	5	69	28	15	28	26	1.96
87323--87481	63	2.5	62	86	4	203	32	19	22	26	1.97
88588--88623	18	2.0	18	88	0	54	16	19	30	33	1.94
88709--88744	18	2.0	18	94	0	63	11	19	33	36	1.87
88483--88848	121	3.0	121	93	0	615	25	13	24	36	1.92
88855--88915	23	2.7	23	89	0	95	19	26	27	26	1.99
92723--92760	19	2.0	20	94	5	69	28	15	28	26	1.96
92728--92886	63	2.5	62	86	4	203	32	19	22	26	1.97
93989--94024	18	2.0	18	94	0	63	13	22	30	33	1.93
93886--94249	121	3.0	121	95	0	658	25	14	23	35	1.93
93901--94085	59	3.1	59	63	23	141	26	16	22	35	1.95
94256--94316	23	2.7	23	89	0	95	19	22	27	29	1.98
97910--97947	17	2.3	17	86	4	51	26	2	0	71	1.00
100402--100447	18	2.7	17	90	6	67	39	6	23	30	1.80
101019--101105	38	2.3	37	88	7	122	39	37	10	12	1.78
101060--101639	221	2.6	216	86	8	750	38	27	11	23	1.88
102450--102488	19	2.1	19	90	0	60	41	2	0	56	1.13
111378--111423	17	2.6	18	80	13	51	63	4	8	23	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113344--113416	32	2.3	32	82	0	101	17	30	28	23	1.97
121572--121618	24	2.0	24	86	0	67	51	0	2	46	1.13
122231--122268	20	1.9	20	89	10	60	15	7	13	63	1.51

Tables:   1

The End!