Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002030.1 Hibiscus syriacus cultivar Beakdansim tig00004142_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78215

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6126--6187
23
2.7
23
77
7
63
54
1
6
37
1.36
6831--6920
32
2.8
32
84
1
119
40
3
8
47
1.51
10442--10883
221
2.0
221
99
0
866
27
20
18
33
1.96
35596--35620
12
2.1
12
100
0
50
60
24
8
8
1.52
38008--38048
6
6.8
6
97
0
73
14
19
48
17
1.81
51213--51254
21
2.0
20
95
4
75
33
9
23
33
1.87
51420--51484
25
2.8
22
69
26
53
50
3
0
46
1.17
51695--51742
24
2.0
24
83
0
60
58
2
0
39
1.10
51676--51754
29
2.7
29
83
13
83
53
2
0
44
1.14
51741--51794
14
3.4
16
72
20
51
48
0
1
50
1.11
51761--51826
34
1.9
34
84
6
89
51
0
0
48
1.00
52259--52312
20
2.6
21
85
5
65
38
24
16
20
1.92
52304--52390
20
4.3
20
92
2
138
47
24
12
16
1.81
52304--52390
41
2.2
40
91
2
138
47
24
12
16
1.81
52518--52570
22
2.4
22
83
0
79
22
39
16
20
1.92
52927--52986
20
3.0
20
87
0
84
11
15
21
51
1.74
54701--54758
21
2.8
21
97
0
107
15
13
36
34
1.87
55199--55269
21
3.4
21
78
5
72
23
36
21
18
1.95
55197--55289
42
2.2
42
84
3
116
21
37
22
18
1.94
59213--59266
24
2.2
24
93
0
90
42
18
16
22
1.89
59229--59280
24
2.2
24
85
0
68
38
21
17
23
1.93
60215--60266
20
2.7
20
87
3
79
32
7
25
34
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
60254--60340
20
4.3
20
89
0
138
18
11
25
44
1.83
60274--60365
40
2.3
40
81
7
107
20
11
23
43
1.85
64753--64872
35
3.3
36
88
5
172
44
19
5
31
1.72
64804--64864
21
3.2
20
65
29
53
44
19
4
31
1.72
68152--68184
15
2.1
16
88
5
50
6
21
18
54
1.64
69365--69508
35
4.1
35
90
3
202
45
19
2
32
1.65
74665--74690
6
4.3
6
100
0
52
84
0
15
0
0.62

Tables:   1

The End!