genome.fa.s2031.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002031.1 Hibiscus syriacus cultivar Beakdansim tig00004143_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51250

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
11438--11495	3	20.0	3	92	7	102	32	0	0	67	0.91
11438--11495	26	2.2	26	96	0	107	32	0	0	67	0.91
12475--12512	14	2.6	15	91	4	60	26	7	0	65	1.19
12527--12562	13	2.8	13	91	8	56	27	2	5	63	1.30
12535--12583	24	2.0	24	84	7	64	32	2	2	63	1.17
12535--12583	13	4.1	11	84	10	53	32	2	2	63	1.17
14140--14209	30	2.4	29	90	4	113	34	12	34	18	1.89
14465--14514	25	2.0	25	88	3	75	34	12	28	26	1.92
17595--18017	210	2.0	211	96	0	776	34	19	13	32	1.90
18318--18356	13	3.0	13	96	0	69	28	15	25	30	1.96
24001--24064	26	2.5	25	90	7	94	32	12	4	50	1.61
26796--26836	21	2.0	21	90	9	66	26	21	12	39	1.89
29030--29228	21	9.8	20	72	6	114	38	24	17	20	1.93
29030--29247	20	10.8	20	69	10	113	38	25	16	19	1.92
29111--29222	41	2.7	41	91	6	174	38	21	16	23	1.93
29195--29387	20	9.6	20	81	6	221	35	25	19	19	1.95
29195--29387	59	3.2	60	81	5	237	35	25	19	19	1.95
29768--29838	33	2.2	33	89	0	106	11	23	16	47	1.79
29918--30023	21	5.6	20	70	16	91	45	18	25	10	1.81
29916--29994	21	3.8	21	79	12	92	45	16	26	11	1.81
29911--30027	41	3.1	38	79	14	136	46	17	26	10	1.80
29981--30034	14	3.5	14	73	22	54	42	24	25	7	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29970--30039	33	2.1	33	97	0	131	47	20	25	7	1.75
29976--30050	33	2.3	33	92	0	123	46	24	22	6	1.75
30046--30143	19	5.7	19	70	22	81	10	24	22	42	1.84
30068--30157	14	5.7	14	74	23	81	8	25	23	42	1.83
30051--30165	33	3.5	33	95	0	212	9	24	20	45	1.81
31861--32240	184	2.1	184	96	1	708	22	12	18	46	1.83
31861--32238	93	4.1	93	96	1	708	22	12	18	46	1.83
32282--32410	19	7.3	19	75	17	125	45	28	17	8	1.77
32318--32410	33	2.8	32	91	4	150	46	27	18	7	1.76
32282--32410	52	2.5	52	74	14	140	45	28	17	8	1.77
32406--32540	19	7.6	19	75	16	128	11	19	23	45	1.82
32428--32484	14	3.7	14	77	20	60	10	21	22	45	1.82
32411--32503	33	2.8	33	95	0	168	10	20	21	47	1.80
34464--34499	14	2.6	14	95	0	63	33	0	22	44	1.53
34606--34703	19	5.4	19	83	13	134	45	16	22	15	1.84
34606--34722	53	2.2	53	96	1	218	44	17	23	14	1.85
37040--37064	12	2.1	12	100	0	50	0	28	0	72	0.86
37239--37285	24	2.0	24	87	8	69	38	21	14	25	1.92
37968--38217	20	12.5	20	85	1	259	20	17	24	37	1.94
38204--38286	21	4.0	21	73	6	78	25	16	24	33	1.96
38184--38282	42	2.4	43	77	11	100	21	18	23	37	1.94
47016--47049	16	2.1	16	100	0	68	17	26	20	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47703--47937	43	5.4	43	86	1	256	27	17	26	28	1.98
48376--48432	21	2.7	21	100	0	114	0	36	22	40	1.55
48376--48460	42	2.0	42	81	4	98	2	36	21	40	1.66

Tables:   1

The End!