genome.fa.s2032.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002032.1 Hibiscus syriacus cultivar Beakdansim tig00004147_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72940

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
725--769	22	2.0	23	87	12	67	37	13	22	26	1.91
3926--3960	18	1.9	18	94	0	61	17	48	17	17	1.81
4791--4831	17	2.3	19	87	8	59	43	4	14	36	1.67
6311--6425	24	4.8	24	83	4	142	26	13	18	40	1.88
6642--6690	2	24.5	2	95	0	89	46	0	2	51	1.12
7389--7457	20	3.5	20	83	0	75	30	17	17	34	1.93
7409--7467	20	3.0	20	84	0	73	28	18	16	35	1.93
7561--7725	36	4.6	36	81	4	208	37	15	23	23	1.93
9193--9256	26	2.4	28	85	15	100	43	0	6	50	1.27
9200--9274	22	3.3	22	92	7	132	42	0	8	49	1.32
9198--9274	24	3.3	24	89	7	131	42	0	7	49	1.31
10293--10355	25	2.5	25	86	2	81	30	14	3	52	1.57
11226--11379	65	2.4	65	84	3	186	27	19	22	31	1.98
11902--11942	2	20.5	2	100	0	82	51	0	0	48	1.00
19959--20007	19	2.7	17	84	9	53	26	20	28	24	1.99
19976--20062	45	1.9	45	81	9	106	32	18	24	25	1.97
19979--20136	63	2.5	64	80	9	162	27	18	24	29	1.98
20618--21096	182	2.6	181	87	4	687	41	13	15	28	1.86
23299--23364	21	3.1	21	82	4	87	42	9	30	18	1.81
23306--23364	22	2.8	21	84	5	73	44	8	28	18	1.79
23644--23698	21	2.6	21	100	0	110	56	0	43	0	0.99
25268--25316	19	2.6	19	93	0	80	32	2	12	53	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25528--26705	200	5.8	200	88	4	1732	37	14	15	31	1.89
25528--26705	399	2.9	400	90	3	1795	37	14	15	31	1.89
26383--26430	20	2.4	20	100	0	96	41	4	10	43	1.58
26183--26628	219	2.0	220	92	0	750	37	15	15	32	1.88
28194--28252	12	4.9	12	87	0	82	38	11	33	15	1.84
28194--28268	3	25.0	3	80	0	51	36	9	34	20	1.84
28194--28252	6	9.8	6	84	0	64	38	11	33	15	1.84
29016--29064	24	2.0	24	100	0	98	24	28	18	28	1.98
29756--29865	51	2.2	52	79	11	129	39	16	20	24	1.92
29826--30582	200	3.8	198	85	5	1005	37	14	15	31	1.88
32956--33664	200	3.5	197	83	7	747	39	13	16	30	1.87
33766--33810	23	2.0	23	95	0	81	37	20	8	33	1.83
34169--34225	27	2.1	27	83	6	71	59	1	0	38	1.08
34241--34310	36	2.0	35	88	8	106	54	2	1	41	1.24
34241--34299	17	3.4	17	76	15	66	55	1	1	40	1.20
34239--34310	37	1.9	37	83	10	94	55	2	1	40	1.23
34472--34543	30	2.4	29	86	11	101	54	1	1	43	1.17
40099--40125	12	2.2	12	100	0	54	25	66	7	0	1.17
40666--40758	31	3.0	30	74	12	80	50	8	11	29	1.68
42100--42150	23	2.2	24	85	3	68	23	9	3	62	1.42
44996--45183	29	6.6	29	83	3	184	32	2	17	47	1.59
51654--51723	35	2.0	35	88	5	106	51	8	10	30	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61800--61840	22	1.9	21	95	5	73	41	19	19	19	1.91

Tables:   1

The End!