genome.fa.s2033.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002033.1 Hibiscus syriacus cultivar Beakdansim tig00004148_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86732

Tables:   1   

This is table  1  of  1  ( 69 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2239--2269	15	2.1	15	100	0	62	25	51	16	6	1.68
4778--4998	105	2.1	105	83	2	266	40	22	14	23	1.90
5140--5303	53	3.1	53	65	16	140	32	20	9	36	1.86
5141--5351	106	2.0	106	97	0	395	32	22	9	36	1.86
10137--10346	105	2.0	105	84	0	276	39	22	14	23	1.91
10487--10699	106	2.0	105	93	0	363	32	21	7	37	1.83
11928--11999	22	3.3	22	80	3	83	18	27	19	34	1.95
13195--13288	24	4.0	24	77	2	82	27	14	18	39	1.90
13246--13295	24	2.1	24	88	0	73	30	10	20	40	1.85
16079--16147	28	2.5	29	78	19	85	65	1	0	33	1.02
16103--16143	20	2.0	21	86	13	59	68	2	0	29	1.03
16070--16146	16	4.4	16	74	19	57	64	2	0	32	1.07
20218--20242	2	12.5	2	100	0	50	52	0	0	48	1.00
25622--25724	24	4.3	24	83	9	129	28	20	36	14	1.92
25622--25724	48	2.1	48	87	3	145	28	20	36	14	1.92
25479--26003	279	1.9	278	85	2	739	28	23	30	18	1.98
25896--26167	24	11.3	24	94	0	379	23	22	41	12	1.88
30393--30453	12	5.1	12	87	0	86	42	31	8	18	1.79
30393--30445	24	2.2	24	100	0	106	43	32	7	16	1.76
34388--34641	37	6.8	37	80	10	295	41	7	4	46	1.53
35999--36067	20	3.2	23	62	26	60	44	7	0	47	1.30
35979--36067	41	2.2	41	100	0	178	42	6	0	50	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39859--39964	50	2.3	45	82	14	119	33	1	11	52	1.48
41395--41446	20	2.6	20	96	0	95	38	26	13	21	1.90
41502--41870	20	18.5	20	85	4	458	34	26	18	20	1.96
42552--42598	24	2.0	24	87	8	69	25	14	21	38	1.92
42773--42797	12	2.1	12	100	0	50	72	0	28	0	0.86
45078--45384	19	17.4	19	80	16	376	46	18	20	14	1.83
45106--45384	52	5.2	52	84	9	384	46	17	21	14	1.83
45145--45384	71	3.4	71	91	5	373	47	17	20	14	1.83
45422--45512	19	5.0	19	83	14	129	14	23	16	46	1.83
47611--47666	14	3.7	14	76	17	58	44	23	21	10	1.83
47592--47683	32	2.8	33	91	3	159	46	21	20	10	1.81
47555--47688	19	7.6	19	75	18	119	45	23	19	11	1.82
47684--47811	19	7.3	19	73	19	116	9	16	28	45	1.78
47684--47775	32	2.8	32	88	8	141	8	17	28	45	1.78
47855--48601	93	8.1	93	97	1	1434	46	18	12	21	1.83
47855--48601	185	4.0	186	98	1	1434	46	18	12	21	1.83
47855--48601	278	2.7	278	98	1	1439	46	18	12	21	1.83
50304--50393	14	5.7	14	74	23	81	42	23	25	8	1.83
50296--50410	33	3.5	33	95	0	212	45	20	24	9	1.81
50303--50415	19	6.8	18	72	23	88	43	22	24	9	1.83
50427--50481	14	3.6	14	73	21	56	9	25	23	41	1.83
50411--50481	33	2.2	33	94	0	124	8	22	25	43	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50422--50503	33	2.5	33	89	2	119	9	25	21	42	1.84
50434--50522	20	4.8	20	72	19	75	12	24	19	43	1.85
50602--50672	33	2.2	33	92	0	115	47	18	22	11	1.80
50854--50908	22	2.5	22	81	0	74	20	16	40	23	1.91
51054--51246	20	9.6	20	80	5	210	19	19	25	35	1.96
51054--51246	60	3.2	60	81	0	242	19	19	25	35	1.96
51302--51353	20	2.6	20	96	0	95	21	13	26	38	1.90
55378--55402	2	12.5	2	100	0	50	52	0	0	48	1.00
55608--55727	62	1.9	62	88	6	181	50	10	3	35	1.52
55608--55741	62	2.1	62	84	9	175	51	11	3	33	1.55
57058--57082	4	6.2	4	100	0	50	72	0	0	28	0.86
58026--58135	58	1.9	58	83	3	141	33	17	3	45	1.66
61415--61512	38	2.6	38	86	0	133	25	22	26	25	2.00
63493--63525	2	16.5	2	100	0	66	51	0	0	48	1.00
63979--64004	2	13.0	2	100	0	52	50	0	0	50	1.00
67707--67804	38	2.6	38	86	0	133	27	23	25	23	2.00
69999--70074	31	2.5	31	74	8	75	31	14	1	52	1.50
71726--71750	13	1.9	13	100	0	50	64	0	0	36	0.94
72281--72453	60	2.9	60	80	3	206	30	24	7	36	1.83
76543--76602	30	2.0	30	87	3	86	40	18	10	31	1.84
78136--78164	11	2.6	11	100	0	58	20	31	13	34	1.92
78755--78824	34	2.1	34	97	0	131	22	21	20	35	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
81117--81149	14	2.5	13	86	13	50	24	21	0	54	1.45
81741--81773	17	1.9	17	88	11	50	33	0	0	66	0.92
82578--82648	31	2.3	31	100	0	142	42	14	18	25	1.87

Tables:   1

The End!