genome.fa.s2034.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002034.1 Hibiscus syriacus cultivar Beakdansim tig00004149_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  97650

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1489--1516	2	14.0	2	100	0	56	50	0	0	50	1.00
2132--2287	79	2.0	77	93	2	267	41	7	8	42	1.63
2146--2311	77	2.1	79	81	6	185	45	7	12	34	1.70
4275--4333	31	1.9	31	92	0	100	40	6	10	42	1.65
4374--4454	32	2.4	34	85	6	112	49	7	0	43	1.30
4434--4469	15	2.4	15	95	0	63	52	0	0	47	1.00
14386--14421	18	1.9	19	88	5	56	36	11	8	44	1.70
14710--14748	18	2.2	17	86	4	51	35	5	2	56	1.35
20911--21032	63	1.9	63	90	3	192	38	24	18	18	1.93
22163--23039	436	2.0	436	96	0	1623	46	8	7	36	1.64
23468--23520	3	18.0	3	96	3	99	33	0	0	66	0.92
27207--27241	18	1.9	18	88	0	52	54	0	17	28	1.43
28338--28424	24	3.7	23	82	3	84	20	13	18	47	1.83
28341--28405	12	5.5	11	74	18	60	16	18	18	46	1.85
32602--32636	18	2.0	18	88	5	54	48	2	0	48	1.16
34160--34295	21	6.6	20	81	9	123	28	24	22	24	1.99
34160--34295	42	3.3	42	81	8	152	28	24	22	24	1.99
34197--34336	62	2.3	62	87	7	196	29	22	21	27	1.99
34305--34351	21	2.2	21	84	0	58	31	23	19	25	1.98
35970--36013	23	1.9	23	90	0	70	38	2	0	59	1.10
43650--43690	19	2.1	20	90	4	66	51	0	12	36	1.40
49892--49967	40	1.9	40	86	5	109	43	13	0	43	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51021--51053	2	17.0	2	87	6	50	48	0	3	48	1.17
54903--54971	31	2.2	30	80	7	75	46	13	7	33	1.70
55192--55231	3	13.3	3	100	0	80	32	0	0	67	0.91
56433--56535	53	1.9	53	80	7	120	38	9	12	38	1.76
56669--56693	2	12.5	2	100	0	50	48	0	0	52	1.00
64182--64219	20	1.9	20	88	0	58	21	26	10	42	1.85
67205--67244	21	1.9	21	84	0	53	40	17	5	37	1.72
67259--67813	277	2.0	277	99	0	1101	33	19	9	37	1.85
76306--76331	6	4.3	6	100	0	52	34	0	15	50	1.45
76556--76588	17	1.9	17	93	0	57	39	3	21	36	1.69
78211--78403	99	1.9	99	93	0	332	24	28	12	34	1.92
81018--81071	2	27.0	2	100	0	108	50	0	0	50	1.00
82533--82570	2	19.0	2	100	0	76	50	0	0	50	1.00
83415--83455	15	2.7	16	85	7	50	41	2	0	56	1.13
84493--84539	26	1.9	24	83	12	60	31	10	12	44	1.77

Tables:   1

The End!