genome.fa.s2035.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002035.1 Hibiscus syriacus cultivar Beakdansim tig00004150_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79333

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8509--8567	3	20.3	3	93	6	104	33	0	0	66	0.92
13011--13123	55	2.1	55	86	3	156	43	11	22	23	1.85
13019--13141	55	2.2	55	80	5	133	45	14	19	20	1.85
13803--13953	72	2.1	72	89	0	230	37	12	25	24	1.90
18507--18620	37	3.1	37	85	2	158	34	23	16	25	1.95
18507--18602	36	2.6	36	90	1	147	38	22	17	20	1.93
18507--18646	73	1.9	73	84	5	185	33	22	19	24	1.97
19007--19347	54	6.3	54	92	0	558	36	18	26	19	1.94
19007--19596	108	5.5	107	78	9	487	34	17	25	22	1.96
19007--19576	162	3.5	161	80	7	541	34	18	24	22	1.96
19460--19595	54	2.5	54	80	4	114	33	19	25	22	1.97
19778--19821	3	15.3	3	90	9	74	34	0	0	65	0.93
34925--35030	3	35.7	3	90	1	169	64	0	0	34	1.00
35325--35997	113	5.9	113	92	1	1028	27	19	14	37	1.91
36398--36452	22	2.5	22	90	0	92	38	14	12	34	1.84
38508--38689	83	2.2	83	92	2	303	36	21	13	28	1.91
47865--47974	3	36.7	3	92	0	184	64	0	0	34	1.00
48098--48151	23	2.3	23	100	0	108	29	22	20	27	1.98
51570--51601	14	2.1	16	88	11	50	50	0	0	50	1.00
51579--51628	24	2.0	27	84	11	70	64	0	0	36	0.94
59474--59522	25	2.0	25	88	8	73	40	2	2	55	1.23
60360--60413	20	2.7	20	88	0	72	59	5	9	25	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60398--60440	15	3.0	14	80	13	52	58	2	13	25	1.48
61389--61502	39	2.9	39	84	7	142	42	1	18	37	1.61
64613--64640	14	2.0	14	100	0	56	57	7	7	28	1.52
67281--67440	56	2.9	56	90	1	241	30	21	5	41	1.76
75053--75109	3	18.3	3	82	7	69	59	1	0	38	1.08
76240--76288	2	24.5	2	95	0	89	46	0	0	53	1.00
77522--77612	45	2.0	46	85	6	123	36	12	20	30	1.89

Tables:   1

The End!