genome.fa.s2036.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002036.1 Hibiscus syriacus cultivar Beakdansim tig00004151_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85332

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1612--1697	28	2.9	30	84	6	122	25	26	13	33	1.94
4997--5116	30	4.0	30	86	2	168	25	25	14	34	1.94
4997--5116	61	2.0	60	86	1	168	25	25	14	34	1.94
8579--8697	46	2.7	43	77	6	130	31	17	15	34	1.92
9360--9897	270	2.0	270	96	0	986	35	15	19	28	1.93
12637--14962	4	586.8	4	97	1	4471	25	0	24	50	1.50
22611--22846	4	59.5	4	97	1	449	25	0	24	50	1.50
22843--22939	6	16.2	6	97	0	185	17	16	31	34	1.92
23482--23508	2	13.5	2	100	0	54	51	0	0	48	1.00
23688--23746	21	2.7	22	76	5	75	22	22	20	35	1.96
23731--23822	20	4.6	20	79	5	78	29	23	19	27	1.98
24643--24696	24	2.2	24	93	0	90	20	18	20	40	1.91
27030--27299	140	1.9	140	96	0	495	29	12	14	42	1.83
27270--27583	20	16.6	20	75	14	274	33	23	18	25	1.97
27392--27574	74	2.5	74	94	0	312	32	22	20	24	1.98
27432--27568	34	3.9	34	80	12	159	33	22	21	22	1.97
27573--27630	20	2.9	20	78	0	71	12	18	24	44	1.84
27729--27790	14	4.3	14	77	6	61	46	14	0	38	1.45
28718--28810	42	2.2	42	80	3	107	24	17	37	20	1.93
29307--29403	20	4.8	20	85	0	131	41	24	16	17	1.89
29662--29711	18	2.8	18	93	0	82	42	6	20	32	1.76
31439--31545	20	5.5	19	83	5	90	46	22	15	14	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31931--31973	22	2.0	22	90	0	68	20	16	39	23	1.92
32157--32263	20	5.3	20	88	0	142	23	20	27	28	1.99
32157--32287	40	3.3	40	83	2	138	23	20	25	30	1.99
45681--45713	12	2.6	13	85	9	50	51	0	6	42	1.26
46574--46614	21	2.0	21	90	4	66	21	29	17	31	1.96
46577--46614	20	1.9	20	89	10	60	18	31	15	34	1.92
47119--47174	22	2.5	22	94	0	94	58	0	37	3	1.15
49525--49585	31	2.0	31	90	0	95	54	1	21	22	1.54
50728--50752	2	12.5	2	100	0	50	48	0	0	52	1.00
57504--57583	38	2.1	38	97	0	151	47	6	15	31	1.70
59186--59268	13	5.9	14	75	13	64	65	3	1	30	1.17
59974--60118	73	2.0	73	89	2	220	41	11	15	31	1.83
64365--64456	40	2.3	40	94	1	159	48	7	15	28	1.72
69942--70269	55	6.1	54	78	10	182	31	22	16	29	1.96
69972--70282	111	2.9	106	81	11	336	30	22	15	30	1.95
69972--70283	51	5.9	52	82	8	287	31	22	15	30	1.95
70287--70358	37	2.0	36	94	2	126	20	22	20	36	1.96
71669--71813	27	5.2	27	70	20	70	11	16	0	71	1.17
71647--71758	44	2.5	44	81	11	111	7	19	1	71	1.18
71691--71751	27	2.3	27	80	8	72	9	18	1	70	1.23
71720--71756	16	2.3	16	85	0	56	10	18	0	70	1.16
71713--71776	15	4.1	16	80	10	62	9	18	1	70	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71647--71751	26	3.8	26	71	12	66	7	20	1	70	1.21
71731--71825	22	4.6	21	64	21	58	11	13	0	74	1.07
71787--71816	9	3.4	9	90	9	53	10	10	0	80	0.92
71730--71814	38	2.2	37	78	10	91	11	12	0	75	1.05
71787--71828	17	2.5	17	80	7	50	9	14	0	76	1.02
81468--81572	45	2.3	46	91	6	169	40	19	8	32	1.82
85242--85292	26	2.1	25	89	10	79	41	21	15	21	1.90

Tables:   1

The End!