Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002037.1 Hibiscus syriacus cultivar Beakdansim tig00004153_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58840

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1275--1323
3
17.0
3
83
8
66
61
0
2
36
1.08
3212--3263
24
2.2
24
100
0
104
28
34
11
25
1.91
14139--14184
16
2.8
16
96
3
83
36
19
4
39
1.72
19100--19185
23
3.9
22
78
11
79
17
29
27
25
1.97
25589--25694
7
15.0
7
76
8
72
18
0
37
43
1.51
25754--25798
20
2.2
20
92
0
72
20
26
15
37
1.92
27013--27039
2
13.5
2
100
0
54
48
0
0
51
1.00
28287--28370
29
2.9
29
92
5
136
15
38
27
19
1.91
29138--29181
21
2.1
21
91
0
70
29
0
15
54
1.42
29582--29608
14
1.9
14
100
0
54
7
3
14
74
1.18
29579--29611
17
1.9
17
88
11
50
9
3
15
72
1.21
32831--33624
60
13.2
60
96
0
1410
40
0
13
45
1.45
33004--33030
10
2.7
10
100
0
54
40
0
18
40
1.51
33017--33179
35
5.2
34
61
27
92
41
0
12
46
1.42
33292--33455
11
13.5
11
68
22
57
42
0
13
44
1.43
33377--33599
35
7.2
34
60
27
95
40
0
13
45
1.43
33472--33640
25
7.0
25
68
22
94
39
0
15
44
1.47
33592--33639
14
3.6
14
83
16
75
35
0
18
45
1.50
34538--34582
23
2.0
23
86
0
63
55
2
2
40
1.24
35776--35809
15
2.2
16
94
5
61
55
5
0
38
1.24
35862--35967
30
3.5
30
87
5
142
47
14
0
38
1.44
35866--35920
15
3.6
16
70
20
55
43
14
0
41
1.45
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36330--36411
27
3.0
27
100
0
164
40
25
15
18
1.90
37158--37257
45
2.2
45
89
1
146
53
8
2
37
1.42
37334--37372
17
2.4
16
91
4
60
56
0
0
43
0.99
41377--41441
2
32.5
2
100
0
130
49
0
0
50
1.00
49150--49186
17
2.1
18
90
5
58
18
5
0
75
0.99
49207--49282
3
25.3
3
100
0
152
32
0
0
67
0.91
51740--51808
22
3.0
22
71
8
75
50
10
2
36
1.51
51844--51898
26
2.2
26
83
3
67
43
10
5
40
1.63
55826--56208
193
2.0
190
97
2
723
26
31
22
19
1.97

Tables:   1

The End!