genome.fa.s2038.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002038.1 Hibiscus syriacus cultivar Beakdansim tig00004157_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56332

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3292--3326	15	2.4	15	90	4	54	28	0	8	62	1.24
12409--13175	55	13.9	55	93	0	1282	33	19	11	35	1.88
14401--14455	22	2.6	22	82	8	69	38	20	12	29	1.89
25391--25743	184	1.9	185	84	5	480	40	15	11	32	1.84
29419--29486	31	2.2	31	97	0	127	39	16	7	36	1.76
29820--29873	21	2.6	21	96	0	99	25	16	27	29	1.97
29862--29933	20	3.6	20	86	0	108	8	22	25	44	1.80
29925--29996	22	3.4	22	70	18	80	18	16	26	38	1.91
29946--30014	19	3.5	19	70	18	68	18	14	24	42	1.88
29925--30089	41	4.2	41	77	16	186	18	18	25	38	1.93
30018--30077	20	2.9	20	76	13	68	11	23	26	38	1.89
30849--30941	22	4.4	22	74	9	95	36	24	18	20	1.95
30827--30941	22	5.6	20	70	11	72	37	23	18	20	1.94
30872--30960	41	2.2	40	86	8	117	39	23	19	17	1.92
30933--31018	20	4.2	20	76	8	102	39	24	20	15	1.91
30885--31005	41	3.0	42	87	10	155	37	23	20	19	1.94
30933--31027	41	2.3	41	82	7	104	38	25	21	14	1.91
32283--32341	2	29.5	2	100	0	118	49	0	0	50	1.00
33401--33444	3	14.7	3	100	0	88	65	0	0	34	0.93
34308--34403	44	2.2	45	83	9	126	5	16	9	68	1.34
34344--34393	26	1.9	26	91	0	82	6	16	6	72	1.25
39014--39052	16	2.4	16	95	0	69	23	12	20	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42282--42334	12	4.5	12	83	2	63	54	1	1	41	1.22
50994--51052	23	2.6	22	74	12	57	57	1	1	38	1.19

Tables:   1

The End!