genome.fa.s2039.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002039.1 Hibiscus syriacus cultivar Beakdansim tig00004159_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  146967

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6359--6403	23	2.0	23	86	0	63	35	8	8	46	1.66
10187--10224	20	1.9	20	89	10	60	68	2	13	15	1.32
12750--12782	14	2.2	15	84	15	50	66	0	3	30	1.06
12756--12782	14	1.9	14	100	0	54	70	0	0	29	0.88
14658--14700	2	21.0	2	88	4	59	51	2	2	44	1.27
14652--14691	19	2.1	19	100	0	80	52	5	5	37	1.45
17276--17328	2	26.5	2	100	0	106	49	0	0	50	1.00
17455--17501	20	2.3	20	92	0	76	31	25	19	23	1.98
17492--17540	20	2.5	20	96	0	89	46	24	10	18	1.79
17688--17730	22	2.0	21	86	8	61	16	41	18	23	1.89
18585--18645	2	30.5	2	100	0	122	49	0	0	50	1.00
27926--27963	20	1.9	20	88	0	58	23	34	31	10	1.89
28449--28764	150	2.1	150	93	1	537	27	17	21	34	1.95
28732--28776	23	2.0	23	86	0	63	20	26	26	26	1.99
31863--31930	13	4.9	13	71	16	57	22	2	2	72	1.12
33549--33582	2	17.5	2	93	6	61	0	50	0	50	1.00
35086--35120	14	2.6	13	86	8	52	37	0	0	62	0.95
36376--36408	17	1.9	17	93	0	57	33	0	0	66	0.92
36793--36824	14	2.1	16	88	11	50	43	0	0	56	0.99
36812--36867	17	3.5	17	74	18	57	46	3	3	46	1.37
38378--38426	24	2.0	25	96	4	91	46	12	8	32	1.71
44444--44540	32	3.0	32	92	0	158	21	25	17	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44869--44940	29	2.5	29	85	14	89	61	1	5	31	1.28
48788--49127	4	85.5	4	97	1	621	23	0	26	49	1.53
49352--49386	2	17.5	2	87	0	52	42	0	5	51	1.25
58875--58909	2	17.5	2	87	0	52	51	0	48	0	1.00
63199--63228	2	15.0	2	100	0	60	50	0	0	50	1.00
68249--68567	170	1.9	169	98	1	613	31	17	19	31	1.95
71767--71840	37	2.0	37	97	2	141	29	16	10	43	1.82
80258--80574	128	2.5	128	100	0	634	42	4	17	35	1.69
80658--80957	20	14.9	19	82	9	262	38	26	19	16	1.92
80719--80957	60	3.9	60	89	6	347	35	27	19	17	1.94
80714--80965	40	6.2	40	90	6	368	38	26	19	16	1.92
81061--81193	6	22.5	6	99	0	252	32	51	16	0	1.45
81690--81752	6	10.5	6	100	0	126	0	15	50	33	1.45
81849--82182	20	16.2	20	80	7	287	16	19	25	38	1.92
81878--82101	22	10.6	22	81	11	274	17	18	28	35	1.94
81858--82125	42	6.4	42	84	8	343	16	19	27	36	1.93
81849--82125	84	3.3	83	87	7	395	16	19	26	37	1.93
81849--82180	104	3.2	102	84	7	354	16	19	25	38	1.92
82761--82800	2	20.5	2	94	5	73	50	0	0	50	1.00
86553--86605	21	2.5	22	75	6	56	47	9	30	13	1.74
88268--88456	95	2.0	95	89	2	290	31	17	19	31	1.95
89544--89620	2	41.5	2	70	14	58	49	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89533--89619	45	1.9	45	95	0	156	49	0	0	50	1.00
90298--90378	36	2.2	37	86	2	110	32	17	12	38	1.87
90405--90472	34	2.0	34	85	2	93	23	20	14	41	1.89
90546--90632	36	2.4	37	86	1	113	25	20	12	41	1.88
90507--90733	102	2.2	102	97	0	429	30	19	12	37	1.88
90648--90735	36	2.4	36	88	0	122	27	20	12	39	1.88
90507--90851	102	3.4	100	86	4	302	29	18	12	39	1.87
90835--90929	35	2.7	34	83	6	102	36	17	10	34	1.85
91563--91614	2	28.5	2	81	18	69	46	0	0	53	1.00
91563--91614	11	4.8	12	82	17	69	46	0	0	53	1.00
92666--92711	2	23.0	2	100	0	92	50	0	0	50	1.00
107914--107951	18	2.1	19	90	5	60	65	10	0	23	1.23
108118--108185	33	2.0	34	81	16	79	41	7	1	50	1.39
108665--108722	30	1.9	30	82	10	73	60	5	12	22	1.51
110088--110123	3	12.0	3	93	0	63	33	0	2	63	1.08
114435--114543	50	2.2	50	78	6	112	52	4	0	43	1.22
115996--116082	3	29.0	3	83	4	113	60	0	2	36	1.09
121859--122231	6	61.7	6	95	1	647	49	17	0	32	1.50
123399--123457	29	2.0	29	100	0	118	37	6	28	27	1.82
131315--131365	26	2.0	26	96	0	93	29	21	5	43	1.76
135025--135053	2	15.0	2	92	7	51	48	0	0	51	1.00
135361--135394	6	6.0	6	90	10	54	17	0	11	70	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135361--135399	11	3.5	11	89	6	60	17	2	10	69	1.28
135361--135399	17	2.3	16	83	12	51	17	2	10	69	1.28
141845--141917	28	2.7	28	95	4	132	6	16	9	67	1.40
143187--143285	40	2.5	40	90	1	155	41	13	5	40	1.66

Tables:   1

The End!