Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000204.1 Hibiscus syriacus cultivar Beakdansim tig00000364_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 78212
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.33
Found at i:774 original size:23 final size:23
Alignment explanation
Indices: 722--774 Score: 58
Period size: 22 Copynumber: 2.3 Consensus size: 23
712 TTATGTGTAT
*
722 TTTATTTATTTATATATATTACC
1 TTTATTTATTTATATATATTAAC
745 TTT-TTTATTT-TATAT-TTATAC
1 TTTATTTATTTATATATATTA-AC
766 TATTATTTA
1 T-TTATTTA
775 CTATAATTTT
Statistics
Matches: 26, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
20 3 0.12
21 7 0.27
22 9 0.35
23 7 0.27
ACGTcount: A:0.28, C:0.06, G:0.00, T:0.66
Consensus pattern (23 bp):
TTTATTTATTTATATATATTAAC
Found at i:801 original size:4 final size:4
Alignment explanation
Indices: 792--886 Score: 54
Period size: 4 Copynumber: 22.2 Consensus size: 4
782 TTTTCTATGC
*
792 TTTA TTTA TTTA TTTA -TTA TTTTA TTTTA TTTTA TTT- CTT- TTTA TTT-
1 TTTA TTTA TTTA TTTA TTTA -TTTA -TTTA -TTTA TTTA TTTA TTTA TTTA
*
839 TGGTTGAA TTTA TTTA TTTA TTTTA TTTA TTTTA TTTTA TTTT TTTA T
1 T--TT--A TTTA TTTA TTTA -TTTA TTTA -TTTA -TTTA TTTA TTTA T
887 ATCTAACATG
Statistics
Matches: 77, Mismatches: 4, Indels: 20
0.76 0.04 0.20
Matches are distributed among these distances:
3 8 0.10
4 38 0.49
5 28 0.36
6 2 0.03
8 1 0.01
ACGTcount: A:0.20, C:0.01, G:0.03, T:0.76
Consensus pattern (4 bp):
TTTA
Found at i:818 original size:5 final size:5
Alignment explanation
Indices: 808--881 Score: 75
Period size: 5 Copynumber: 15.4 Consensus size: 5
798 TATTTATTTA
** * *
808 TTATT TTATT TTATT TTATT TCT-TT TTATT TTGGT TGAAT TTA-T TTA-T
1 TTATT TTATT TTATT TTATT T-TATT TTATT TTATT TTATT TTATT TTATT
856 TTATT TTA-T TTATT TTATT TTATT TT
1 TTATT TTATT TTATT TTATT TTATT TT
882 TTTATATCTA
Statistics
Matches: 59, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
4 13 0.22
5 45 0.76
6 1 0.02
ACGTcount: A:0.19, C:0.01, G:0.04, T:0.76
Consensus pattern (5 bp):
TTATT
Found at i:2025 original size:24 final size:24
Alignment explanation
Indices: 1989--2089 Score: 107
Period size: 24 Copynumber: 4.2 Consensus size: 24
1979 AATGCTAAAC
* *
1989 GAACATGTTCATGAA-ACCGTTCGT
1 GAACATATACATGAACA-CGTTCGT
***
2013 GAACATATACATGAATGTGTTCGT
1 GAACATATACATGAACACGTTCGT
**
2037 GAACATAT-CATGAACGTGTTCGT
1 GAACATATACATGAACACGTTCGT
*
2060 GAACATATACATGAACACATTCGT
1 GAACATATACATGAACACGTTCGT
2084 GAACAT
1 GAACAT
2090 TAAAGGAACA
Statistics
Matches: 67, Mismatches: 8, Indels: 4
0.85 0.10 0.05
Matches are distributed among these distances:
23 22 0.33
24 45 0.67
ACGTcount: A:0.35, C:0.18, G:0.19, T:0.29
Consensus pattern (24 bp):
GAACATATACATGAACACGTTCGT
Found at i:2144 original size:67 final size:68
Alignment explanation
Indices: 2037--2166 Score: 154
Period size: 67 Copynumber: 1.9 Consensus size: 68
2027 ATGTGTTCGT
*** * ** **
2037 GAACATATCATGAACGTGTTCGTGAACATATACATGAACACATTCGTGAACATTAAAGGAACACT
1 GAACATATCATGAACACATTCGTGAACATATAAACAAACACATTCAAGAACATTAAAGGAACACT
2102 AAA
66 AAA
* * *
2105 GAACAT-TCATGAACACATTCGTGAATATATAAACAAACACCTTCAAGAACATTAAATGAACA
1 GAACATATCATGAACACATTCGTGAACATATAAACAAACACATTCAAGAACATTAAAGGAACA
2167 TGTTCGTAAA
Statistics
Matches: 51, Mismatches: 11, Indels: 1
0.81 0.17 0.02
Matches are distributed among these distances:
67 45 0.88
68 6 0.12
ACGTcount: A:0.45, C:0.18, G:0.13, T:0.23
Consensus pattern (68 bp):
GAACATATCATGAACACATTCGTGAACATATAAACAAACACATTCAAGAACATTAAAGGAACACT
AAA
Found at i:2278 original size:30 final size:30
Alignment explanation
Indices: 2178--2289 Score: 113
Period size: 30 Copynumber: 3.7 Consensus size: 30
2168 GTTCGTAAAC
*
2178 AATAAATAAATGAACACGAACATCC-TCAAA
1 AATAAATAAACGAACACGAACA-CCTTCAAA
* **
2208 AATAAATAAACGAACACGAACACGATATTGAA
1 AATAAATAAACGAACACGAACAC-CT-TCAAA
* *
2240 AAT--TTAAACGAACACGAGCACCTTCAAA
1 AATAAATAAACGAACACGAACACCTTCAAA
*
2268 AATAAATAAACAAACACGAACA
1 AATAAATAAACGAACACGAACA
2290 TAATCTTATT
Statistics
Matches: 65, Mismatches: 12, Indels: 10
0.75 0.14 0.11
Matches are distributed among these distances:
28 6 0.09
29 2 0.03
30 51 0.78
32 6 0.09
ACGTcount: A:0.56, C:0.20, G:0.09, T:0.15
Consensus pattern (30 bp):
AATAAATAAACGAACACGAACACCTTCAAA
Found at i:3717 original size:18 final size:18
Alignment explanation
Indices: 3694--3737 Score: 70
Period size: 18 Copynumber: 2.4 Consensus size: 18
3684 AACATAACAT
*
3694 TTATCATGATCTCTGTCA
1 TTATCATGATCTCTATCA
3712 TTATCATGATCTCTATCA
1 TTATCATGATCTCTATCA
*
3730 CTATCATG
1 TTATCATG
3738 TATTAACATT
Statistics
Matches: 24, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
18 24 1.00
ACGTcount: A:0.25, C:0.23, G:0.09, T:0.43
Consensus pattern (18 bp):
TTATCATGATCTCTATCA
Found at i:4025 original size:21 final size:20
Alignment explanation
Indices: 3984--4078 Score: 92
Period size: 21 Copynumber: 4.8 Consensus size: 20
3974 TGAAATTTTC
3984 CCCGAAGGACCAC--TATAT
1 CCCGAAGGACCACTGTATAT
*
4002 CCCGTAGGACCACTGTATTAT
1 CCCGAAGGACCACTGTA-TAT
*
4023 CCCGAAGGACCACTGTATTGT
1 CCCGAAGGACCACTGTA-TAT
* *
4044 CCCGAAGAACCAC--TATGT
1 CCCGAAGGACCACTGTATAT
4062 CCC-ATAGGACCACTGTA
1 CCCGA-AGGACCACTGTA
4079 ACCCTCGACT
Statistics
Matches: 66, Mismatches: 5, Indels: 10
0.81 0.06 0.12
Matches are distributed among these distances:
17 1 0.02
18 25 0.38
19 2 0.03
20 4 0.06
21 34 0.52
ACGTcount: A:0.28, C:0.32, G:0.19, T:0.21
Consensus pattern (20 bp):
CCCGAAGGACCACTGTATAT
Found at i:7584 original size:83 final size:81
Alignment explanation
Indices: 7444--7649 Score: 252
Period size: 83 Copynumber: 2.5 Consensus size: 81
7434 GTGATGAGTT
* * * * * *
7444 GTACTTTAGCGGCGTTTTTATAC-AACGCCGCAATAAGGATCGTTTATAATGGCGTTTTTCTAAC
1 GTACTTTAGCGGC-ATTTTATACAAATGCCGCAATAGGGTTCGTTCATAATGGCGTTTTTCCAAC
**
7508 AAACGCCATGATAGATTA
65 AAACGCCATGATA-AAGA
* *
7526 GTACTTTAGCGGCATTTTATACAAATGTCCGCAATAGGGTTCGTTCATAGTGGTGTTTTTCCAAC
1 GTACTTTAGCGGCATTTTATACAAATG-CCGCAATAGGGTTCGTTCATAATGGCGTTTTTCCAAC
* *
7591 AAATGCCGTGATAAAGA
65 AAACGCCATGATAAAGA
*
7608 GTACTTTAGCGGCATTTTTATATAAATGCCGCAATAGGGTTC
1 GTACTTTAGCGGCA-TTTTATACAAATGCCGCAATAGGGTTC
7650 TTTAGCGACA
Statistics
Matches: 108, Mismatches: 13, Indels: 6
0.85 0.10 0.05
Matches are distributed among these distances:
81 8 0.07
82 46 0.43
83 54 0.50
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.33
Consensus pattern (81 bp):
GTACTTTAGCGGCATTTTATACAAATGCCGCAATAGGGTTCGTTCATAATGGCGTTTTTCCAACA
AACGCCATGATAAAGA
Found at i:10995 original size:43 final size:43
Alignment explanation
Indices: 10848--11155 Score: 329
Period size: 43 Copynumber: 7.2 Consensus size: 43
10838 AAGGTAATTA
* * **
10848 GCGGCGTTTGTAT-CAAAAATGCCGCTATAGAT-CTGATATTTT
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGATATTGACCTTTT
* * *
10890 GCGGCGTTTGTATCC-AAAACGCCGCCATAGAT-CTGACTTTTT
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGATATTGACCTTTT
* * * *
10932 GCGGCATTTGTTCAAAAAACGCAGCTATAGAT-TTTACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATTGACCTTTT
* **
10974 GCGGCGTTTGTATCCTAAAACGCCGCTATAGATATCAACCTTTT
1 GCGGCGTTTGT-TCCAAAAACGCCGCTATAGATATTGACCTTTT
* *
11018 GCGGCGTTTGTTCCAAAAACGTCACTATAGATATTGACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATTGACCTTTT
* * **
11061 GCAGCGTTTGTTCCAAAAACGCCGCTAGAGATAGCGACCTTTT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATTGACCTTTT
* * * * *
11104 GCGGCGTTTGTTCCAAAAATGCCGCGATAGATCTTAACCTATT
1 GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATTGACCTTTT
11147 GCGGCGTTT
1 GCGGCGTTT
11156 TTTGTTCTCA
Statistics
Matches: 225, Mismatches: 37, Indels: 7
0.84 0.14 0.03
Matches are distributed among these distances:
41 2 0.01
42 78 0.35
43 126 0.56
44 19 0.08
ACGTcount: A:0.25, C:0.22, G:0.21, T:0.32
Consensus pattern (43 bp):
GCGGCGTTTGTTCCAAAAACGCCGCTATAGATATTGACCTTTT
Found at i:13280 original size:27 final size:24
Alignment explanation
Indices: 13227--13288 Score: 65
Period size: 27 Copynumber: 2.5 Consensus size: 24
13217 TAAATTTGTT
13227 TTTAAAA-AAA-AATTATAAATAA
1 TTTAAAATAAATAATTATAAATAA
*
13249 CTTAAAATAAATAATTACTAAATAATA
1 TTTAAAATAAATAATTA-TAAAT-A-A
*
13276 TTTAATATAAATA
1 TTTAAAATAAATA
13289 TTAATAGTCC
Statistics
Matches: 32, Mismatches: 3, Indels: 5
0.80 0.08 0.12
Matches are distributed among these distances:
22 6 0.19
23 3 0.09
24 5 0.16
25 5 0.16
26 1 0.03
27 12 0.38
ACGTcount: A:0.61, C:0.03, G:0.00, T:0.35
Consensus pattern (24 bp):
TTTAAAATAAATAATTATAAATAA
Found at i:13365 original size:18 final size:17
Alignment explanation
Indices: 13344--13379 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
13334 AATTATAAAG
*
13344 TTATCCTAATATATATAA
1 TTATACTAATAT-TATAA
13362 TTATACTAATATTATAA
1 TTATACTAATATTATAA
13379 T
1 T
13380 AAGTCTTATA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 6 0.35
18 11 0.65
ACGTcount: A:0.44, C:0.08, G:0.00, T:0.47
Consensus pattern (17 bp):
TTATACTAATATTATAA
Found at i:14430 original size:3 final size:3
Alignment explanation
Indices: 14422--14470 Score: 50
Period size: 3 Copynumber: 17.3 Consensus size: 3
14412 TTTATAAATT
* * *
14422 ATA ATA ATA ATA ATA A-A ATA ATA A-A ATT ATA ATA A-A ATA TTT ATA
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA
14467 ATA A
1 ATA A
14471 AACTCGGACG
Statistics
Matches: 37, Mismatches: 6, Indels: 6
0.76 0.12 0.12
Matches are distributed among these distances:
2 6 0.16
3 31 0.84
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
ATA
Found at i:14453 original size:19 final size:19
Alignment explanation
Indices: 14403--14460 Score: 62
Period size: 19 Copynumber: 2.9 Consensus size: 19
14393 GCATGTAACC
* *
14403 AAAATTATATTTATAAATTAT
1 AAAATTATA-ATA-AAATAAT
*
14424 AATAATAATAATAAAATAAT
1 AA-AATTATAATAAAATAAT
14444 AAAATTATAATAAAATA
1 AAAATTATAATAAAATA
14461 TTTATAATAA
Statistics
Matches: 32, Mismatches: 4, Indels: 4
0.80 0.10 0.10
Matches are distributed among these distances:
19 14 0.44
20 8 0.25
21 4 0.12
22 6 0.19
ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36
Consensus pattern (19 bp):
AAAATTATAATAAAATAAT
Found at i:19031 original size:26 final size:26
Alignment explanation
Indices: 18997--19050 Score: 99
Period size: 26 Copynumber: 2.1 Consensus size: 26
18987 TTCTACAAAT
18997 ATCTAAGACATACTTTGATAGCCCAA
1 ATCTAAGACATACTTTGATAGCCCAA
*
19023 ATCTAAGACGTACTTTGATAGCCCAA
1 ATCTAAGACATACTTTGATAGCCCAA
19049 AT
1 AT
19051 GACTAAAACT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
26 27 1.00
ACGTcount: A:0.37, C:0.22, G:0.13, T:0.28
Consensus pattern (26 bp):
ATCTAAGACATACTTTGATAGCCCAA
Found at i:27454 original size:21 final size:21
Alignment explanation
Indices: 27430--27482 Score: 79
Period size: 21 Copynumber: 2.5 Consensus size: 21
27420 GAGATTCTTC
*
27430 TGAAGCAGAACCAGCACTTGA
1 TGAAGAAGAACCAGCACTTGA
*
27451 TGAATAAGAACCAGCACTTGA
1 TGAAGAAGAACCAGCACTTGA
*
27472 TGAACAAGAAC
1 TGAAGAAGAAC
27483 TAGAGAGTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
21 29 1.00
ACGTcount: A:0.43, C:0.21, G:0.21, T:0.15
Consensus pattern (21 bp):
TGAAGAAGAACCAGCACTTGA
Found at i:29270 original size:2 final size:2
Alignment explanation
Indices: 29263--29309 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
29253 AGGTGGGAAA
29263 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
29303 AT AT AT A
1 AT AT AT A
29310 ATTCCACCAA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 41 0.95
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:34847 original size:145 final size:145
Alignment explanation
Indices: 34352--35287 Score: 520
Period size: 145 Copynumber: 6.4 Consensus size: 145
34342 ATAATATTAA
* * *
34352 ATTAAGAGTGTGATTTGTTTCTAAAAAATCT-TACAAAATCAATGTTATTTGT-TTCATAATACT
1 ATTACGAGTGTGATTT-TTT-TAAAAAAT-TGTACAAATTCAATGTT-TTT-TATTCATAATATT
** * * * * ** * * * * ** * *
34415 AAATTACGGTTGTGGTGTTTATCGCCGATGTGATTTTAGTGTTG-TAGTTGTAAATACTGCATAC
61 AAATTACGGTTACGGTGTCTAACACAGATGTGATTACAATATCGCGA-TTGTGGATACTACAGAC
* * *
34479 GTTACATAACGTGTAACTGTA
125 GTTACATAATGTGTAACGGTC
* ** * * * * *
34500 ATTATGAGTGTGA--TTTAAAAAAAAATGTACAAGTTCAATGTTATATGATTTATAATATTAAAT
1 ATTACGAGTGTGATTTTTTTAAAAAATTGTACAAATTCAATGTT-TTTTATTCATAATATTAAAT
** ** * * ** * *
34563 TATAGTTACAATATTTGTCAC-GAAAGTAATTACAATATCGCGATTGTGGATACTACAGACGTTA
65 TACGGTTACGGTGTCTAACACAG-ATGTGATTACAATATCGCGATTGTGGATACTACAGACGTTA
*
34627 CATAACGTGTAACGGTC
129 CATAATGTGTAACGGTC
* * *
34644 A-T--GAGTGTGAATTATTTTTAAAAAATTTGTACAAATTCAATG-TTCTGATCCATAAATATTA
1 ATTACGAGTGTG-ATT-TTTTTAAAAAA-TTGTACAAATTCAATGTTTTTTATTCAT-AATATTA
* * * * * *
34705 CATTACGGTTACGGTGTCTAACATAGATGTGATTATAGTATCGCGATTGTGGATATTACATACGT
62 AATTACGGTTACGGTGTCTAACACAGATGTGATTACAATATCGCGATTGTGGATACTACAGACGT
*
34770 TACATAATGTGTAACGGTT
127 TACATAATGTGTAACGGTC
* * * **
34789 GTTACGTGTGTGATTTTTTTAAAAAATTGTACAAATTTAATGTTTTTTATTCATAATATTAAACA
1 ATTACGAGTGTGATTTTTTTAAAAAATTGTACAAATTCAATGTTTTTTATTCATAATATTAAATT
* * * * * * **
34854 ACGGTTACGATATTTGTCACGAATACTACAAACGTTACGTTAC-ATAACATGTAACTTGT-GATA
66 ACGGTTACG----GTGT--C-TA-AC-ACAGATGTGA--TTACAATATC--GCGA-TTGTGGATA
* ** *
34917 CTA-AAACGTTACATAA--CATAACGGTT
117 CTACAGACGTTACATAATGTGTAACGGTC
* *
34943 GTTACGAGTGTGATTTTTTCTAAAAAATTGTACAAATTCAA-ATTTTTTATTCATAATATTAAAT
1 ATTACGAGTGTGATTTTTT-TAAAAAATTGTACAAATTCAATGTTTTTTATTCATAATATTAAAT
** * * * * * *
35007 TACGGTTACGGTGTCTGTCACGGTTGTGATTACAATATCGCTACTATGGATACTACAGACGTTAG
65 TACGGTTACGGTGTCTAACACAGATGTGATTACAATATCGCGATTGTGGATACTACAGACGTTAC
**
35072 ATAATGCATAACGGTC
130 ATAATGTGTAACGGTC
* * * *
35088 ATTATGAGTGTGATTTTGTTTCTAAAAAATTGTACAAATACAAAGTTATCTTATTCATAATATT-
1 ATTACGAGTGTGA-TTT-TTT-TAAAAAATTGTACAAATTCAATGTT-TTTTATTCATAATATTA
* ** * * * *
35152 TA-TA-AATTAC-GT-TGT--CACA-ATGTGATTACAATATCAC-ATTGT-GATATTGCAGACGT
62 AATTACGGTTACGGTGTCTAACACAGATGTGATTACAATATCGCGATTGTGGATACTACAGACGT
35208 TACATAATGTGTAACGGTC
127 TACATAATGTGTAACGGTC
** * * *
35227 ATTACGAGAATGATTTGCTTCTAAAAAATTGTATAAATTCAATGTTTTCTGATTCATAATA
1 ATTACGAGTGTGATTT--TTTTAAAAAATTGTACAAATTCAATGTTTT-TTATTCATAATA
35288 ATTACATTGT
Statistics
Matches: 614, Mismatches: 133, Indels: 92
0.73 0.16 0.11
Matches are distributed among these distances:
137 1 0.00
138 36 0.06
139 40 0.07
140 3 0.00
141 25 0.04
142 13 0.02
143 18 0.03
144 103 0.17
145 143 0.23
146 44 0.07
147 29 0.05
148 22 0.04
149 18 0.03
150 3 0.00
151 1 0.00
152 1 0.00
153 2 0.00
154 62 0.10
155 23 0.04
156 15 0.02
157 8 0.01
158 4 0.01
ACGTcount: A:0.35, C:0.12, G:0.16, T:0.38
Consensus pattern (145 bp):
ATTACGAGTGTGATTTTTTTAAAAAATTGTACAAATTCAATGTTTTTTATTCATAATATTAAATT
ACGGTTACGGTGTCTAACACAGATGTGATTACAATATCGCGATTGTGGATACTACAGACGTTACA
TAATGTGTAACGGTC
Found at i:35224 original size:139 final size:145
Alignment explanation
Indices: 34913--35287 Score: 391
Period size: 138 Copynumber: 2.6 Consensus size: 145
34903 TGTAACTTGT
* **
34913 GATACTA-AAACGTTACATAA--CATAACGGTTGTTACGAGTGTGATTT-TTTCTAAAAAATTGT
1 GATACTACAGACGTTACATAATGCATAACGGTCATTACGAGTGTGATTTGTTTCTAAAAAATTGT
* ** **
34974 ACAAATTCAAA-TTTTTTATTCATAATATTAAATTACGGTTACGGTGTCTGTCACGGTTGTGATT
66 ACAAATTCAAAGTTTCTTATTCATAATATTAAATTACAATTAC-G-GTCTGTCACGAATGTGATT
*
35038 ACAATATCGCTACTATG
129 ACAATATCACTACTATG
* *
35055 GATACTACAGACGTTAGATAATGCATAACGGTCATTATGAGTGTGATTTTGTTTCTAAAAAATTG
1 GATACTACAGACGTTACATAATGCATAACGGTCATTACGAGTGTGA-TTTGTTTCTAAAAAATTG
* *
35120 TACAAATACAAAGTTATCTTATTCATAATATT-TA-TA-AATTAC-GT-TGTCAC-AATGTGATT
65 TACAAATTCAAAGTT-TCTTATTCATAATATTAAATTACAATTACGGTCTGTCACGAATGTGATT
35179 ACAATATCAC-A-T-TG
129 ACAATATCACTACTATG
* * ** ** *
35193 TGATATTGCAGACGTTACATAATGTGTAACGGTCATTACGAGAATGATTTGCTTCTAAAAAATTG
1 -GATACTACAGACGTTACATAATGCATAACGGTCATTACGAGTGTGATTTGTTTCTAAAAAATTG
* * *
35258 TATAAATTCAATGTTTTCTGATTCATAATA
65 TACAAATTCAAAG-TTTCTTATTCATAATA
35288 ATTACATTGT
Statistics
Matches: 198, Mismatches: 26, Indels: 22
0.80 0.11 0.09
Matches are distributed among these distances:
138 42 0.21
139 41 0.21
140 1 0.01
141 16 0.08
142 13 0.07
143 13 0.07
145 20 0.10
146 7 0.04
147 27 0.14
148 3 0.02
149 15 0.08
ACGTcount: A:0.35, C:0.13, G:0.15, T:0.38
Consensus pattern (145 bp):
GATACTACAGACGTTACATAATGCATAACGGTCATTACGAGTGTGATTTGTTTCTAAAAAATTGT
ACAAATTCAAAGTTTCTTATTCATAATATTAAATTACAATTACGGTCTGTCACGAATGTGATTAC
AATATCACTACTATG
Found at i:35905 original size:24 final size:23
Alignment explanation
Indices: 35851--35905 Score: 58
Period size: 24 Copynumber: 2.3 Consensus size: 23
35841 TTTTTTATGT
* *
35851 TTAATTTGTTGTTGTTGATTATA
1 TTAATTTATTGTTATTGATTATA
*
35874 TTATTTTATTGTTCATTGATTATGA
1 TTAATTTATTGTT-ATTGATTAT-A
35899 -TAATTTA
1 TTAATTTA
35906 GGTGATAGTG
Statistics
Matches: 26, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
23 11 0.42
24 14 0.54
25 1 0.04
ACGTcount: A:0.25, C:0.02, G:0.13, T:0.60
Consensus pattern (23 bp):
TTAATTTATTGTTATTGATTATA
Found at i:39117 original size:14 final size:14
Alignment explanation
Indices: 39098--39130 Score: 66
Period size: 14 Copynumber: 2.4 Consensus size: 14
39088 CCTGTTCTCC
39098 AAGCCCTATCACCA
1 AAGCCCTATCACCA
39112 AAGCCCTATCACCA
1 AAGCCCTATCACCA
39126 AAGCC
1 AAGCC
39131 TCCTCCTCTT
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 19 1.00
ACGTcount: A:0.36, C:0.42, G:0.09, T:0.12
Consensus pattern (14 bp):
AAGCCCTATCACCA
Found at i:43446 original size:20 final size:19
Alignment explanation
Indices: 43407--43458 Score: 59
Period size: 20 Copynumber: 2.6 Consensus size: 19
43397 TTTCTTTGAT
43407 ATTAAAAAATAAATAAATA
1 ATTAAAAAATAAATAAATA
* *
43426 ATTAAAACAATTAATATATA
1 ATTAAAA-AATAAATAAATA
*
43446 ATTTATAAAATAA
1 A-TTAAAAAATAA
43459 GATATTTATT
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
19 7 0.26
20 15 0.56
21 5 0.19
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (19 bp):
ATTAAAAAATAAATAAATA
Found at i:43696 original size:13 final size:13
Alignment explanation
Indices: 43672--43737 Score: 60
Period size: 14 Copynumber: 4.7 Consensus size: 13
43662 AATAATTGCA
43672 ATAATAATTAAAAT
1 ATAAT-ATTAAAAT
43686 ATAATATTAAAAT
1 ATAATATTAAAAT
* *
43699 ATAAATATAAAAAA
1 AT-AATATTAAAAT
43713 ATTGAATGATTAAAAT
1 A-T-AAT-ATTAAAAT
*
43729 ATAAAATTA
1 ATAATATTA
43738 TAAAACTAGA
Statistics
Matches: 43, Mismatches: 6, Indels: 7
0.77 0.11 0.12
Matches are distributed among these distances:
13 14 0.33
14 17 0.40
15 5 0.12
16 7 0.16
ACGTcount: A:0.64, C:0.00, G:0.03, T:0.33
Consensus pattern (13 bp):
ATAATATTAAAAT
Found at i:45866 original size:44 final size:42
Alignment explanation
Indices: 45803--45890 Score: 158
Period size: 44 Copynumber: 2.0 Consensus size: 42
45793 TGTGTTTTTG
45803 ATCAATTGAGTCCTCAATATTTCAAGGTTCTCTAATCAATCCTA
1 ATCAATTGAGTCCTCAATATTTCAAGGTTCTCTAA--AATCCTA
45847 ATCAATTGAGTCCTCAATATTTCAAGGTTCTCTAAAATCCTA
1 ATCAATTGAGTCCTCAATATTTCAAGGTTCTCTAAAATCCTA
45889 AT
1 AT
45891 GGGCAAAGTT
Statistics
Matches: 44, Mismatches: 0, Indels: 2
0.96 0.00 0.04
Matches are distributed among these distances:
42 9 0.20
44 35 0.80
ACGTcount: A:0.33, C:0.22, G:0.09, T:0.36
Consensus pattern (42 bp):
ATCAATTGAGTCCTCAATATTTCAAGGTTCTCTAAAATCCTA
Found at i:55435 original size:17 final size:16
Alignment explanation
Indices: 55402--55434 Score: 66
Period size: 16 Copynumber: 2.1 Consensus size: 16
55392 AAATGCAAAG
55402 ATTAAAGTTGAAAAAA
1 ATTAAAGTTGAAAAAA
55418 ATTAAAGTTGAAAAAA
1 ATTAAAGTTGAAAAAA
55434 A
1 A
55435 AAGGGAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.64, C:0.00, G:0.12, T:0.24
Consensus pattern (16 bp):
ATTAAAGTTGAAAAAA
Found at i:57223 original size:23 final size:20
Alignment explanation
Indices: 57196--57260 Score: 58
Period size: 23 Copynumber: 3.0 Consensus size: 20
57186 GTATATGCTT
*
57196 ATATAATTATAGTATATAATAT
1 ATAT-ATTATA-TATATAATAC
*
57218 AGTATATACATATTATATAATAC
1 A-TATAT-TATA-TATATAATAC
57241 ATATATTATATACTATAATA
1 ATATATTATATA-TATAATA
57261 ATCGTATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 7
0.77 0.09 0.15
Matches are distributed among these distances:
20 2 0.06
21 10 0.28
22 8 0.22
23 16 0.44
ACGTcount: A:0.49, C:0.05, G:0.03, T:0.43
Consensus pattern (20 bp):
ATATATTATATATATAATAC
Found at i:58185 original size:167 final size:167
Alignment explanation
Indices: 57793--58996 Score: 1401
Period size: 167 Copynumber: 7.2 Consensus size: 167
57783 ATGTATCATC
* * * * * **** * *
57793 GAGCTGAGTGGAATCAAACTCGAAAGT-TTTTGTTGACAGATAGTTTTTCTCGACTTAAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCTATG
* ** * * * *
57857 CTGTAAATTTGACCTGCCCTTGAGCTGAATAG-AATCAAACTCGAAGGTATTTGTTGACAGATAG
66 CTGCAAA--TGATGTGCCTTTGAGCTGAGT-GTAATCGAACTCGAAGGTCTTTGTTGACAGATAG
* * * * * *
57921 CCCTTCTTGCCTTTAGCTATGTTGTAAATTTGATTTGCCTCT
128 CCCTTCTCGCCTTGAGCTATGCTGCAAA--TGATGTGCCTTT
* * * * * *
57963 GAGCTGAGTGTGTAATCGAACTCGAAGGTCTTTTGTTTGTAGATAGCCTTTCTCGCCTTAAGCTA
1 GAGCTGA--GTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCTA
* * * *
58028 TGCTACAAATGATGTACCTTTAAGCTGAGTGTAATCGAACTCGAAGGTCTTGGTTGACAGATAGC
64 TGCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGC
* * *
58093 TCTTCTCGCCTTGAGGTATGCTACAAATGATGTGCCTTT
129 CCTTCTCGCCTTGAGCTATGCTGCAAATGATGTGCCTTT
* * *
58132 GAGCTAAGTGTAATCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCTATA
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCTATG
* * * * * *
58197 TTGCAAATGATGTGCATTTGAGCTGTGTGTAATCGAACTTGAAGGTCTTGGTTGACAGATAACCC
66 CTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCC
* *
58262 TTCTCGCCTTGAGTTATGCTGTAAATGATGTGCCTTT
131 TTCTCGCCTTGAGCTATGCTGCAAATGATGTGCCTTT
* * * * *
58299 GAGCTGAGTGTAATCGAACTCAAAGGTTTTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGTTAT
1 GAGCTGAGTGTAATCGAACTCGAAGG-TCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCTAT
* * *
58364 GCTTCAAATGATGTGCCTTTGAGTTGAGTGTAATCGAACTCGAAGGTCTTTTATTTG-CAGATAG
65 GCTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTT-GTTGACAGATAG
* * *
58428 CCCTTCTCACCTTGAGCTATGCTACAAATGATGCGCCTTT
128 CCCTTCTCGCCTTGAGCTATGCTGCAAATGATGTGCCTTT
* * *
58468 GAGTTGAGTGTAATCGAACTCGAAGGTC-TTGGTTGACAGATAACCCTTCTCGCCTTGAGTTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCTATG
* * * *
58532 TTGTAAATGATGTGCCTTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAGCC
66 CTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGACAGATAGCC
* *
58597 CTTCTCGCCTTGAGCTATGCTGCAAATGATGCGCTTTT
130 CTTCTCGCCTTGAGCTATGCTGCAAATGATGTGCCTTT
* * *
58635 GAGCTGAGTGTAATCGAACTCGAAGGTC-TTGATTGACAGATAACCCTTCTCGCCTTGAGTTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCTATG
* * * * * * *
58699 CTGTAAATAATGTGCCTTTGAGCTTAGTGTAATTGAACTCGAAGGTATTTTGTTGGCAAATAGCC
66 CTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGT-CTTTGTTGACAGATAGCC
*
58764 CTTCTCGCCTTGAGCTATGCTACAAATGATGTGCCTTT
130 CTTCTCGCCTTGAGCTATGCTGCAAATGATGTGCCTTT
** *
58802 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCTATG
* * * * * *
58867 CTGCAAATGATGCGCCTTTGAGCTGAGTGTAATTGAACTCGAAGGTCTTTTGTTGGCATATAACA
66 CTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTC-TTTGTTGACAGATAGCC
* * * * **
58932 TTTATTGCCTTGAGTTATGCTGCAAATGATACGCCTTT
130 CTTCTCGCCTTGAGCTATGCTGCAAATGATGTGCCTTT
*
58970 GAGCTGAGTGTAATCGAACTCAAAGGT
1 GAGCTGAGTGTAATCGAACTCGAAGGT
58997 ATTTTGGTCA
Statistics
Matches: 904, Mismatches: 119, Indels: 24
0.86 0.11 0.02
Matches are distributed among these distances:
166 3 0.00
167 468 0.52
168 221 0.24
169 83 0.09
170 11 0.01
171 65 0.07
172 17 0.02
173 36 0.04
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (167 bp):
GAGCTGAGTGTAATCGAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCTATG
CTGCAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTGTTGACAGATAGCCC
TTCTCGCCTTGAGCTATGCTGCAAATGATGTGCCTTT
Found at i:58208 original size:84 final size:84
Alignment explanation
Indices: 57793--59002 Score: 1446
Period size: 84 Copynumber: 14.4 Consensus size: 84
57783 ATGTATCATC
* * * * *** * *
57793 GAGCTGAGTGGAATCAAACTCGAAAGT-TTTTGTTGACAGATAGTTTTTCTCGACTTAAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
* ** *
57857 CTGTAAATTTGACCTGCCCTT
66 CTGCAAA--TGATGTGCCTTT
* * * * * *
57878 GAGCTGAATAG-AATCAAACTCGAAGGT-ATTTGTTGACAGATAGCCCTTCTTGCCTTTAGCTAT
1 GAGCTGAGT-GTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTAT
* * * *
57941 GTTGTAAATTTGATTTGCCTCT
65 GCTGCAAA--TGATGTGCCTTT
* * * *
57963 GAGCTGAGTGTGTAATCGAACTCGAAGGTCTTTTGTTTGTAGATAGCCTTTCTCGCCTTAAGCTA
1 GAGCTGA--GTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTA
* *
58028 TGCTACAAATGATGTACCTTT
64 TGCTGCAAATGATGTGCCTTT
* * * * *
58049 AAGCTGAGTGTAATCGAACTCGAAGGTC-TTGGTTGACAGATAGCTCTTCTCGCCTTGAGGTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
*
58113 CTACAAATGATGTGCCTTT
66 CTGCAAATGATGTGCCTTT
* * * * *
58132 GAGCTAAGTGTAATCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCTATA
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
* *
58197 TTGCAAATGATGTGCATTT
66 CTGCAAATGATGTGCCTTT
* * * * * *
58216 GAGCTGTGTGTAATCGAACTTGAAGGTC-TTGGTTGACAGATAACCCTTCTCGCCTTGAGTTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
*
58280 CTGTAAATGATGTGCCTTT
66 CTGCAAATGATGTGCCTTT
* * *
58299 GAGCTGAGTGTAATCGAACTCAAAGGTTTTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGTTAT
1 GAGCTGAGTGTAATCGAACTCGAAGG-TCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTAT
*
58364 GCTTCAAATGATGTGCCTTT
65 GCTGCAAATGATGTGCCTTT
* * * *
58384 GAGTTGAGTGTAATCGAACTCGAAGGTCTTTTATTTGCAGATAGCCCTTCTCACCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
* *
58449 CTACAAATGATGCGCCTTT
66 CTGCAAATGATGTGCCTTT
* * * * *
58468 GAGTTGAGTGTAATCGAACTCGAAGGTC-TTGGTTGACAGATAACCCTTCTCGCCTTGAGTTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
* *
58532 TTGTAAATGATGTGCCTTT
66 CTGCAAATGATGTGCCTTT
*
58551 GAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
* *
58616 CTGCAAATGATGCGCTTTT
66 CTGCAAATGATGTGCCTTT
* * *
58635 GAGCTGAGTGTAATCGAACTCGAAGGTC--TTGATTGACAGATAACCCTTCTCGCCTTGAGTTAT
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTG-TTGGCAGATAGCCCTTCTCGCCTTGAGCTAT
* *
58698 GCTGTAAATAATGTGCCTTT
65 GCTGCAAATGATGTGCCTTT
* * * *
58718 GAGCTTAGTGTAATTGAACTCGAAGGTATTTTGTTGGCAAATAGCCCTTCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
*
58783 CTACAAATGATGTGCCTTT
66 CTGCAAATGATGTGCCTTT
*
58802 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
*
58867 CTGCAAATGATGCGCCTTT
66 CTGCAAATGATGTGCCTTT
* * * ** * * *
58886 GAGCTGAGTGTAATTGAACTCGAAGGTCTTTTGTTGGCATATAACATTTATTGCCTTGAGTTATG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
**
58951 CTGCAAATGATACGCCTTT
66 CTGCAAATGATGTGCCTTT
* *
58970 GAGCTGAGTGTAATCGAACTCAAAGGTATTTTG
1 GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTG
59003 GTCAAGGTGC
Statistics
Matches: 976, Mismatches: 137, Indels: 25
0.86 0.12 0.02
Matches are distributed among these distances:
82 3 0.00
83 282 0.29
84 471 0.48
85 153 0.16
86 17 0.02
87 16 0.02
88 34 0.03
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (84 bp):
GAGCTGAGTGTAATCGAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATG
CTGCAAATGATGTGCCTTT
Found at i:58944 original size:419 final size:417
Alignment explanation
Indices: 57871--59002 Score: 1638
Period size: 419 Copynumber: 2.7 Consensus size: 417
57861 AAATTTGACC
* * * * *
57871 TGCCCTTGAGCTGAATAG-AATCAAACTCGAAGGTA-TTTGTTGACAGATAGCCCTTCTTGCCTT
1 TGCCTTTGAGCTGAGT-GTAATCGAACTCGAAGGTATTTTGTTGGCAGATAGCCCTTCTCGCCTT
* * ** * * *
57934 TAGCTATGTTGTAAATTTGATTTGCCTCTGAGCTGAGTGTGTAATCGAACTCGAAGGTCTTTTGT
65 GAGCTATGCTACAAA--TGATGTGCCTTTGAGCTGA--GTGTAATCGAACTCGAAGGTCTTTTAT
* * * ** *
57999 TTGTAGATAGCCTTTCTCGCCTTAAGCTATGCTACAAATGATGTACCTTTAAGCTGAGTGTAATC
126 TTGCAGATAGCCCTTCTCGCCTTGAGCTATGCTACAAATGATGCGCCTTTGAGCTGAGTGTAATC
* * *
58064 GAACTCGAAGGTCTTGGTTGACAGATAGCTCTTCTCGCCTTGAGGTATGCTACAAATGATGTGCC
191 GAACTCGAAGGTCTTGGTTGACAGATAACT-TTCTCGCCTTGAGTTATGCTGCAAATGATGTGCC
* *
58129 TTTGAGCTAAGTGTAATCAAACTCGAAGGTCTTTGGTTGGCAGATAACCCTTCTCGCCTTGAGCT
255 TTTGAGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGCT
* * * * *
58194 ATATTGCAAATGATGTGCATTTGAGCTGTGTGTAATCGAACTTGAAGGTCTTGGTTGACAGATAA
320 ATACTGCAAATGATGCGCATTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGATTGACAGATAA
*
58259 CCCTTCTCGCCTTGAGTTATGCTGTAAATGATG
385 CCCTTCTCGCCTTGAGTTATGCTGTAAATAATG
* *
58292 TGCCTTTGAGCTGAGTGTAATCGAACTCAAAGGTTTTTTTGTTGGCAGATAGCCCTTCTCGCCTT
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGG-TATTTTGTTGGCAGATAGCCCTTCTCGCCTT
* * *
58357 GAGTTATGCTTCAAATGATGTGCCTTTGAGTTGAGTGTAATCGAACTCGAAGGTCTTTTATTTGC
65 GAGCTATGCTACAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTTGC
* *
58422 AGATAGCCCTTCTCACCTTGAGCTATGCTACAAATGATGCGCCTTTGAGTTGAGTGTAATCGAAC
130 AGATAGCCCTTCTCGCCTTGAGCTATGCTACAAATGATGCGCCTTTGAGCTGAGTGTAATCGAAC
* * *
58487 TCGAAGGTCTTGGTTGACAGATAACCCTTCTCGCCTTGAGTTATGTTGTAAATGATGTGCCTTTG
195 TCGAAGGTCTTGGTTGACAGATAA-CTTTCTCGCCTTGAGTTATGCTGCAAATGATGTGCCTTTG
* *
58552 AGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAGCCCTTCTCGCCTTGAGCTATGC
259 AGCTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGCTATAC
*
58617 TGCAAATGATGCGCTTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGATTGACAGATAACCCT
324 TGCAAATGATGCGCATTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGATTGACAGATAACCCT
58682 TCTCGCCTTGAGTTATGCTGTAAATAATG
389 TCTCGCCTTGAGTTATGCTGTAAATAATG
* * *
58711 TGCCTTTGAGCTTAGTGTAATTGAACTCGAAGGTATTTTGTTGGCAAATAGCCCTTCTCGCCTTG
1 TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTATTTTGTTGGCAGATAGCCCTTCTCGCCTTG
*
58776 AGCTATGCTACAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTGGCA
66 AGCTATGCTACAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTTGCA
* *
58841 GATAGCCCTTCTCGCCTTGAGCTATGCTGCAAATGATGCGCCTTTGAGCTGAGTGTAATTGAACT
131 GATAGCCCTTCTCGCCTTGAGCTATGCTACAAATGATGCGCCTTTGAGCTGAGTGTAATCGAACT
* * * * * **
58906 CGAAGGTCTTTTGTTGGCATATAACATTTATTGCCTTGAGTTATGCTGCAAATGATACGCCTTTG
196 CGAAGGTC-TTGGTTGACAGATAAC-TTTCTCGCCTTGAGTTATGCTGCAAATGATGTGCCTTTG
* * *
58971 AGCTGAGTGTAATCGAACTCAAAGGTATTTTG
259 AGCTGAGTGTAATCAAACTCGAAGGTCTTTTG
59003 GTCAAGGTGC
Statistics
Matches: 638, Mismatches: 67, Indels: 14
0.89 0.09 0.02
Matches are distributed among these distances:
418 161 0.25
419 395 0.62
420 2 0.00
421 43 0.07
422 1 0.00
423 36 0.06
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (417 bp):
TGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTATTTTGTTGGCAGATAGCCCTTCTCGCCTTG
AGCTATGCTACAAATGATGTGCCTTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTTTATTTGCA
GATAGCCCTTCTCGCCTTGAGCTATGCTACAAATGATGCGCCTTTGAGCTGAGTGTAATCGAACT
CGAAGGTCTTGGTTGACAGATAACTTTCTCGCCTTGAGTTATGCTGCAAATGATGTGCCTTTGAG
CTGAGTGTAATCAAACTCGAAGGTCTTTTGTTGGCAGATAACCCTTCTCGCCTTGAGCTATACTG
CAAATGATGCGCATTTGAGCTGAGTGTAATCGAACTCGAAGGTCTTGATTGACAGATAACCCTTC
TCGCCTTGAGTTATGCTGTAAATAATG
Found at i:59992 original size:95 final size:95
Alignment explanation
Indices: 59797--60059 Score: 294
Period size: 95 Copynumber: 2.7 Consensus size: 95
59787 GGCTAGCTGG
* * * * * * * * *
59797 ATCCATAAAGCTAGGGCGTTTAATCAATTTCTCTAAAAGGATAGCTCAATATCGTTGTATAG-AT
1 ATCCATAAAGTTGGGGCGTTTAATCAATTGCTCTAGAGGGACAACTC-A-AGC-TT-TATTGTAT
* * * *
59861 ATTCTAATCACTTTTATCAGTCTAGCTTAATATT
62 ATTATAATCACCTTTATCAGGCTAGCTGAATATT
* * *
59895 ATCTATAAAGTTGGGGCGTTTAATCAATTGCTCTAGCGGGACAACTCGAGCTTTATTGTATATTA
1 ATCCATAAAGTTGGGGCGTTTAATCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATTA
*
59960 TAATCACCTTTATCAGGCTAGCTGAATCTT
66 TAATCACCTTTATCAGGCTAGCTGAATATT
* * *
59990 ATCCATAAAGTTGGGGCGTTTAATCAATTTCTTTAGAGGGACAACTCAAGCTTTATTTTATATAT
1 ATCCATAAAGTTGGGGCGTTTAATCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATAT-T
60055 ATAAT
65 ATAAT
60060 ATTATAATCT
Statistics
Matches: 140, Mismatches: 23, Indels: 6
0.83 0.14 0.04
Matches are distributed among these distances:
94 4 0.03
95 90 0.64
96 8 0.06
98 38 0.27
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (95 bp):
ATCCATAAAGTTGGGGCGTTTAATCAATTGCTCTAGAGGGACAACTCAAGCTTTATTGTATATTA
TAATCACCTTTATCAGGCTAGCTGAATATT
Found at i:64463 original size:15 final size:16
Alignment explanation
Indices: 64445--64477 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
64435 ACTCTTCTTC
64445 TTTTTT-TTG-ATTTT
1 TTTTTTGTTGTATTTT
64459 TTTTTTGTTGTATTTT
1 TTTTTTGTTGTATTTT
64475 TTT
1 TTT
64478 CTATACTTCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
14 6 0.35
15 3 0.18
16 8 0.47
ACGTcount: A:0.06, C:0.00, G:0.09, T:0.85
Consensus pattern (16 bp):
TTTTTTGTTGTATTTT
Found at i:64943 original size:23 final size:24
Alignment explanation
Indices: 64889--64953 Score: 64
Period size: 23 Copynumber: 2.8 Consensus size: 24
64879 CTTTTATAAT
* *
64889 TATAGTATATAATATA-ATATGTA
1 TATACTATATAATACATATATGTA
* *
64912 CATATTATATAATACATATAT-TA
1 TATACTATATAATACATATATGTA
64935 TATACTATAATAAT-CATAT
1 TATACTAT-ATAATACATAT
64954 TAAAATATTA
Statistics
Matches: 35, Mismatches: 5, Indels: 4
0.80 0.11 0.09
Matches are distributed among these distances:
23 26 0.74
24 9 0.26
ACGTcount: A:0.48, C:0.06, G:0.03, T:0.43
Consensus pattern (24 bp):
TATACTATATAATACATATATGTA
Found at i:67245 original size:37 final size:37
Alignment explanation
Indices: 67200--67296 Score: 140
Period size: 37 Copynumber: 2.6 Consensus size: 37
67190 CCTTTTCGTC
*
67200 CTACTAGGATTCAAACTCCTAAAAATATGATAGAATT
1 CTACTAGGATTCAAACTCCTAAAAATAAGATAGAATT
* * *
67237 TTGCTAGGATTCAAACTCCTAAAAATAAGATAGAGTT
1 CTACTAGGATTCAAACTCCTAAAAATAAGATAGAATT
* *
67274 CTACTATGATTTAAACTCCTAAA
1 CTACTAGGATTCAAACTCCTAAA
67297 GATAGGATCC
Statistics
Matches: 52, Mismatches: 8, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
37 52 1.00
ACGTcount: A:0.41, C:0.16, G:0.11, T:0.31
Consensus pattern (37 bp):
CTACTAGGATTCAAACTCCTAAAAATAAGATAGAATT
Found at i:68242 original size:2 final size:2
Alignment explanation
Indices: 68235--68295 Score: 122
Period size: 2 Copynumber: 30.5 Consensus size: 2
68225 TTACTATTAC
68235 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68277 TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA T
68296 TCTACACAAG
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 59 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:68455 original size:2 final size:2
Alignment explanation
Indices: 68448--68520 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
68438 GTATTGTTAC
68448 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
68490 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
68521 TGTAATTATC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.49, C:0.00, G:0.00, T:0.51
Consensus pattern (2 bp):
TA
Found at i:68672 original size:21 final size:20
Alignment explanation
Indices: 68606--68708 Score: 82
Period size: 21 Copynumber: 4.8 Consensus size: 20
68596 ATATATTTAC
*
68606 TTTTTTATTTATTTTATATAT
1 TTTTTTATTTGTTTTAT-TAT
68627 ATATTTTCGTACTTTGTTATTATTAT
1 -T-TTTT--TA-TTTGTT-TTATTAT
68653 TTTGTTTATTTGTTTTATTAT
1 TTT-TTTATTTGTTTTATTAT
* *
68674 TTCTTTTTTTTTTTTTA-TAT
1 TT-TTTTATTTGTTTTATTAT
*
68694 TTTATTATTTGTTTT
1 TTTTTTATTTGTTTT
68709 TTTACTTACT
Statistics
Matches: 68, Mismatches: 6, Indels: 17
0.75 0.07 0.19
Matches are distributed among these distances:
19 10 0.15
20 5 0.07
21 20 0.29
22 8 0.12
23 6 0.09
24 2 0.03
25 5 0.07
26 8 0.12
27 4 0.06
ACGTcount: A:0.17, C:0.03, G:0.05, T:0.75
Consensus pattern (20 bp):
TTTTTTATTTGTTTTATTAT
Found at i:68721 original size:27 final size:28
Alignment explanation
Indices: 68665--68725 Score: 72
Period size: 26 Copynumber: 2.2 Consensus size: 28
68655 TGTTTATTTG
* **
68665 TTTTATTATTTCTTTTTTTTTTTTTATA
1 TTTTATTATTTCTGTTTTTTTACTTATA
68693 TTTTATTA-TT-TGTTTTTTTACTTACTA
1 TTTTATTATTTCTGTTTTTTTACTTA-TA
68720 TTTTAT
1 TTTTAT
68726 CTTTGCTTTC
Statistics
Matches: 29, Mismatches: 3, Indels: 3
0.83 0.09 0.09
Matches are distributed among these distances:
26 11 0.38
27 10 0.34
28 8 0.28
ACGTcount: A:0.16, C:0.05, G:0.02, T:0.77
Consensus pattern (28 bp):
TTTTATTATTTCTGTTTTTTTACTTATA
Found at i:73206 original size:13 final size:13
Alignment explanation
Indices: 73188--73242 Score: 60
Period size: 13 Copynumber: 4.2 Consensus size: 13
73178 GGGAAAAAAC
73188 AAAAAAGAAGCAA
1 AAAAAAGAAGCAA
*
73201 AAAAAAGAAAACAA
1 AAAAAAG-AAGCAA
73215 AAAAAAGAA-CAA
1 AAAAAAGAAGCAA
*
73227 AAATAAAAAAG-AA
1 AAA-AAAGAAGCAA
73240 AAA
1 AAA
73243 GGGACAAAAA
Statistics
Matches: 37, Mismatches: 2, Indels: 6
0.82 0.04 0.13
Matches are distributed among these distances:
12 6 0.16
13 19 0.51
14 12 0.32
ACGTcount: A:0.84, C:0.05, G:0.09, T:0.02
Consensus pattern (13 bp):
AAAAAAGAAGCAA
Found at i:73211 original size:25 final size:24
Alignment explanation
Indices: 73183--73243 Score: 70
Period size: 23 Copynumber: 2.5 Consensus size: 24
73173 AAAAAGGGAA
73183 AAAACAAAAAAGAAGCAAAAAAAAG
1 AAAACAAAAAAGAAG-AAAAAAAAG
* *
73208 AAAACAAAAAA-AAGAACAAAAAT
1 AAAACAAAAAAGAAGAAAAAAAAG
*
73231 AAAAAAGAAAAAG
1 AAAACA-AAAAAG
73244 GGACAAAAAA
Statistics
Matches: 31, Mismatches: 3, Indels: 4
0.82 0.08 0.11
Matches are distributed among these distances:
23 12 0.39
24 8 0.26
25 11 0.35
ACGTcount: A:0.82, C:0.07, G:0.10, T:0.02
Consensus pattern (24 bp):
AAAACAAAAAAGAAGAAAAAAAAG
Found at i:73242 original size:14 final size:13
Alignment explanation
Indices: 73180--73242 Score: 63
Period size: 14 Copynumber: 4.5 Consensus size: 13
73170 AACAAAAAGG
73180 GAAAAAACAAAAAA
1 GAAAAAA-AAAAAA
**
73194 GAAGCAAAAAAAA
1 GAAAAAAAAAAAA
73207 GAAAACAAAAAAAA
1 GAAAA-AAAAAAAA
73221 GAACAAAAATAAAAAA
1 G-A-AAAAA-AAAAAA
73237 GAAAAA
1 GAAAAA
73243 GGGACAAAAA
Statistics
Matches: 41, Mismatches: 4, Indels: 8
0.77 0.08 0.15
Matches are distributed among these distances:
13 9 0.22
14 18 0.44
15 4 0.10
16 10 0.24
ACGTcount: A:0.83, C:0.06, G:0.10, T:0.02
Consensus pattern (13 bp):
GAAAAAAAAAAAA
Found at i:73913 original size:22 final size:22
Alignment explanation
Indices: 73850--73916 Score: 125
Period size: 22 Copynumber: 3.0 Consensus size: 22
73840 TCAATCATTC
*
73850 AGCATCAAATGCCAAACCTATG
1 AGCATCAAATGCCAAACCTTTG
73872 AGCATCAAATGCCAAACCTTTG
1 AGCATCAAATGCCAAACCTTTG
73894 AGCATCAAATGCCAAACCTTTG
1 AGCATCAAATGCCAAACCTTTG
73916 A
1 A
73917 CCAAACATAA
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
22 44 1.00
ACGTcount: A:0.39, C:0.27, G:0.13, T:0.21
Consensus pattern (22 bp):
AGCATCAAATGCCAAACCTTTG
Found at i:74992 original size:106 final size:106
Alignment explanation
Indices: 74804--76210 Score: 2089
Period size: 106 Copynumber: 13.3 Consensus size: 106
74794 CAATTTTCCA
* * * *
74804 AGCCAATTTCAACTTCACACCAAAAGATATTGGACTCTAGACAACGCAAGTTCAACTTCACGACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* * *
74869 AAGGGACCGCTGATTGTCAATAAACAATTTCCCAATTTCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
74910 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTTCAGATAACACAAGTTCAACTTCACGACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
** * *
74975 AAGGGACATCTGGTTGTCAATAAACAACTTTCCAATTTCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
**
75016 AGCCAATTT-AACTTCACAGATAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
75080 AAGGGGCCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * *
75121 AGCCAATTTTAACTTCACAACGAATGATATTGGACTCCAAAC-ACGCAAGTTCAACTTCACGACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
75185 AAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
75226 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACATCACAACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
75291 AAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
75332 AGCCAATTTCAACTTTACAACGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* * *
75397 AAGGGACTGTTGGTTGTCAACAAACAACTTCTCAATTTCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
75438 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGAAAACGCAAGTTCAACTTCACGACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* * * *
75503 AAGGAACCGCTGGTTGTTAACAAATAATTTCCCAATTTCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
75544 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACGCAAGTTCAACTTCACGACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* **
75609 AAGGGACCGCTGGTTGTCAATAATTAACTTCCCAATTTCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
75650 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
75715 AAGGGACCGCTGGTTGTCAACAAACAACTTCTCAATTTTAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* *
75756 AGCCAATTTCAACTTCACAACGAAGGATATTGGACTCCAGACAACTCAAGTTCAACTTCACGACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* *
75821 AAGGGACCGCTGGTTGTCAATAAACAATTTCCCAATTTCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * *
75862 AGCCAATTTCAACTTCACAGCGTAGGATATTGGACTCAAGACAACGAAAGTTCAACTTCACGACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
*
75927 AAGGGACCGCTGGTTGTCAATAAACAACTTCCCAATTTCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * * *
75968 AGCCAATTTTAACTTCTCAGCGAAGGATCTTGGAC-CCAAGACAACACAAGCTCAACTTCACGAC
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCC-AGACAACGCAAGTTCAACTTCACGAC
* * *
76032 GAAAGGG-CGGCTGATTGTCAAC-AA-AA-TT-TC-A-TTCAG
65 G-AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
* * * *
76068 AGTCAATTTCAACTTCACAGCGAAGGATATTGGACTCAAGACAACACAAGTTCAACTTCACAACG
1 AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
* * ** *
76133 AAGGGACGGCTGGTTGTCAACAAACAATTTCCCGGTTCCAG
66 AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
*
76174 AGCCAATTTCAACTTCAC-GACGGAGGATATTGGACTC
1 AGCCAATTTCAACTTCACAG-CGAAGGATATTGGACTC
76211 GGAACAATGC
Statistics
Matches: 1183, Mismatches: 105, Indels: 26
0.90 0.08 0.02
Matches are distributed among these distances:
99 5 0.00
100 75 0.06
101 4 0.00
102 3 0.00
103 4 0.00
104 3 0.00
105 196 0.17
106 888 0.75
107 5 0.00
ACGTcount: A:0.34, C:0.25, G:0.18, T:0.23
Consensus pattern (106 bp):
AGCCAATTTCAACTTCACAGCGAAGGATATTGGACTCCAGACAACGCAAGTTCAACTTCACGACG
AAGGGACCGCTGGTTGTCAACAAACAACTTCCCAATTTCAG
Found at i:77668 original size:16 final size:17
Alignment explanation
Indices: 77632--77673 Score: 59
Period size: 16 Copynumber: 2.5 Consensus size: 17
77622 TTCTACTTAT
* *
77632 TTATATTATATATATTT
1 TTATATTTTATATATTA
77649 TTATATTTTAT-TATTA
1 TTATATTTTATATATTA
77665 TTATATTTT
1 TTATATTTT
77674 TTACTTTCTC
Statistics
Matches: 23, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
16 13 0.57
17 10 0.43
ACGTcount: A:0.31, C:0.00, G:0.00, T:0.69
Consensus pattern (17 bp):
TTATATTTTATATATTA
Found at i:77714 original size:12 final size:11
Alignment explanation
Indices: 77692--77731 Score: 55
Period size: 12 Copynumber: 3.6 Consensus size: 11
77682 TCTTTCTTTT
77692 TATTATTCTTG
1 TATTATTCTTG
77703 TATTATTACTTG
1 TATTATT-CTTG
*
77715 TATTATT-TTA
1 TATTATTCTTG
77725 TATTATT
1 TATTATT
77732 TATTTTGTTA
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
10 9 0.33
11 7 0.26
12 11 0.41
ACGTcount: A:0.25, C:0.05, G:0.05, T:0.65
Consensus pattern (11 bp):
TATTATTCTTG
Done.