Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002040.1 Hibiscus syriacus cultivar Beakdansim tig00004161_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 75171
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:1573 original size:20 final size:23
Alignment explanation
Indices: 1525--1582 Score: 77
Period size: 20 Copynumber: 2.6 Consensus size: 23
1515 GCATGGGTAG
1525 TGCATCGATGCACATGTTAAAGAA
1 TGCATCGATGCAC-TGTTAAAGAA
*
1549 TGCATCGATGCACTG-T-AA-CA
1 TGCATCGATGCACTGTTAAAGAA
1569 TGCATCGATGCACT
1 TGCATCGATGCACT
1583 TCAAGGGGAA
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 15 0.45
21 2 0.06
22 1 0.03
23 2 0.06
24 13 0.39
ACGTcount: A:0.31, C:0.22, G:0.21, T:0.26
Consensus pattern (23 bp):
TGCATCGATGCACTGTTAAAGAA
Found at i:2690 original size:30 final size:30
Alignment explanation
Indices: 2620--2724 Score: 86
Period size: 30 Copynumber: 3.5 Consensus size: 30
2610 ACCTATGTCT
* * *
2620 TTTGAGACATATGGACAGTTTACCTAGGTTC
1 TTTGTGACCTATGGACAG-TTACCGAGGTTC
* * *
2651 GTCGGGACCTATGGACAGTTACCGAGGTTC
1 TTTGTGACCTATGGACAGTTACCGAGGTTC
* * * * *
2681 TTTATGACCTCTAGATAGTTACCG-GGGTC
1 TTTGTGACCTATGGACAGTTACCGAGGTTC
*
2710 TTTGTGACCTCTGGA
1 TTTGTGACCTATGGA
2725 TAGGTCCTTC
Statistics
Matches: 59, Mismatches: 15, Indels: 2
0.78 0.20 0.03
Matches are distributed among these distances:
29 17 0.29
30 28 0.47
31 14 0.24
ACGTcount: A:0.21, C:0.20, G:0.27, T:0.32
Consensus pattern (30 bp):
TTTGTGACCTATGGACAGTTACCGAGGTTC
Found at i:2720 original size:29 final size:30
Alignment explanation
Indices: 2667--2727 Score: 88
Period size: 29 Copynumber: 2.1 Consensus size: 30
2657 ACCTATGGAC
*
2667 AGTTACCGAGGTTCTTTATGACCTCTAGAT
1 AGTTACCGAGGGTCTTTATGACCTCTAGAT
* *
2697 AGTTACCG-GGGTCTTTGTGACCTCTGGAT
1 AGTTACCGAGGGTCTTTATGACCTCTAGAT
2726 AG
1 AG
2728 GTCCTTCGGG
Statistics
Matches: 28, Mismatches: 3, Indels: 1
0.88 0.09 0.03
Matches are distributed among these distances:
29 20 0.71
30 8 0.29
ACGTcount: A:0.20, C:0.20, G:0.26, T:0.34
Consensus pattern (30 bp):
AGTTACCGAGGGTCTTTATGACCTCTAGAT
Found at i:4626 original size:32 final size:32
Alignment explanation
Indices: 4589--4677 Score: 133
Period size: 32 Copynumber: 2.8 Consensus size: 32
4579 CTAACACTCC
* *
4589 TGTGCATTATTTGAATGTAACATTGACTCTGT
1 TGTGCATTATTTGAATGCAACACTGACTCTGT
* * *
4621 TGTGCATTATCTGAATGCAATACTGACTTTGT
1 TGTGCATTATTTGAATGCAACACTGACTCTGT
4653 TGTGCATTATTTGAATGCAACACTG
1 TGTGCATTATTTGAATGCAACACTG
4678 CTAGTATCTA
Statistics
Matches: 50, Mismatches: 7, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
32 50 1.00
ACGTcount: A:0.26, C:0.15, G:0.19, T:0.40
Consensus pattern (32 bp):
TGTGCATTATTTGAATGCAACACTGACTCTGT
Found at i:5879 original size:21 final size:21
Alignment explanation
Indices: 5855--5928 Score: 87
Period size: 21 Copynumber: 3.6 Consensus size: 21
5845 CATTTCATCT
5855 GGTATGGATACCAACTTATCC
1 GGTATGGATACCAACTTATCC
* *
5876 GGTATGGATACC-AGTTCTCC
1 GGTATGGATACCAACTTATCC
* * *
5896 TGTATGGATACCAATTTATTC
1 GGTATGGATACCAACTTATCC
*
5917 AGTATGGATACC
1 GGTATGGATACC
5929 CGCGGTATCA
Statistics
Matches: 45, Mismatches: 7, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
20 17 0.38
21 28 0.62
ACGTcount: A:0.27, C:0.20, G:0.20, T:0.32
Consensus pattern (21 bp):
GGTATGGATACCAACTTATCC
Found at i:6610 original size:17 final size:20
Alignment explanation
Indices: 6578--6616 Score: 57
Period size: 17 Copynumber: 2.1 Consensus size: 20
6568 ATGAGAATGA
6578 AAGAAGAATGGAAGAGA-AT
1 AAGAAGAATGGAAGAGATAT
6597 AAGAA-AAT-GAAGAGATAT
1 AAGAAGAATGGAAGAGATAT
6615 AA
1 AA
6617 AAGTCTTCAT
Statistics
Matches: 19, Mismatches: 0, Indels: 3
0.86 0.00 0.14
Matches are distributed among these distances:
17 7 0.37
18 7 0.37
19 5 0.26
ACGTcount: A:0.62, C:0.00, G:0.26, T:0.13
Consensus pattern (20 bp):
AAGAAGAATGGAAGAGATAT
Found at i:11323 original size:1 final size:1
Alignment explanation
Indices: 11317--11342 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
11307 CTGGAAAATC
11317 GGGGGGGGGGGGGGGGGGGGGGGGGG
1 GGGGGGGGGGGGGGGGGGGGGGGGGG
11343 CTTGGACAAA
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:0.00, C:0.00, G:1.00, T:0.00
Consensus pattern (1 bp):
G
Found at i:16503 original size:29 final size:29
Alignment explanation
Indices: 16466--16524 Score: 100
Period size: 29 Copynumber: 2.0 Consensus size: 29
16456 CATTATTTGA
* *
16466 TCACGTTGATATTTTTTAACCTTCTATTT
1 TCACGTTGATATTCTTTAACCATCTATTT
16495 TCACGTTGATATTCTTTAACCATCTATTT
1 TCACGTTGATATTCTTTAACCATCTATTT
16524 T
1 T
16525 GTCTTTCACT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
29 28 1.00
ACGTcount: A:0.22, C:0.19, G:0.07, T:0.53
Consensus pattern (29 bp):
TCACGTTGATATTCTTTAACCATCTATTT
Found at i:18724 original size:8 final size:9
Alignment explanation
Indices: 18713--18783 Score: 51
Period size: 8 Copynumber: 7.9 Consensus size: 9
18703 ATTTTATAGA
18713 AAAAT-AAT
1 AAAATAAAT
18721 AAAATAAAT
1 AAAATAAAT
*
18730 AAACAAAAAT
1 AAA-ATAAAT
*
18740 AAAAAAAAAT
1 -AAAATAAAT
18750 AAAA-AAAGT
1 AAAATAAA-T
*
18759 GAAAATTAAT
1 -AAAATAAAT
18769 -AAATAAAT
1 AAAATAAAT
18777 -AAATAAA
1 AAAATAAA
18784 ACAACCAAGA
Statistics
Matches: 54, Mismatches: 3, Indels: 12
0.78 0.04 0.17
Matches are distributed among these distances:
8 22 0.41
9 11 0.20
10 16 0.30
11 5 0.09
ACGTcount: A:0.77, C:0.01, G:0.03, T:0.18
Consensus pattern (9 bp):
AAAATAAAT
Found at i:18741 original size:10 final size:10
Alignment explanation
Indices: 18712--18756 Score: 63
Period size: 10 Copynumber: 4.3 Consensus size: 10
18702 AATTTTATAG
18712 AAAAATAATAA
1 AAAAATAA-AA
*
18723 AATAAATAAAC
1 AA-AAATAAAA
18734 AAAAATAAAA
1 AAAAATAAAA
18744 AAAAATAAAA
1 AAAAATAAAA
18754 AAA
1 AAA
18757 GTGAAAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 3
0.86 0.06 0.08
Matches are distributed among these distances:
10 20 0.65
11 5 0.16
12 6 0.19
ACGTcount: A:0.84, C:0.02, G:0.00, T:0.13
Consensus pattern (10 bp):
AAAAATAAAA
Found at i:18742 original size:19 final size:19
Alignment explanation
Indices: 18712--18771 Score: 59
Period size: 19 Copynumber: 3.2 Consensus size: 19
18702 AATTTTATAG
*
18712 AAAAATAAT-AAAATAAAT
1 AAAAAAAATAAAAATAAAT
*
18730 AAACAAAAATAAAAAAAAAT
1 AAA-AAAAATAAAAATAAAT
* * *
18750 AAAAAAAGTGAAAATTAAT
1 AAAAAAAATAAAAATAAAT
18769 AAA
1 AAA
18772 TAAATAAATA
Statistics
Matches: 34, Mismatches: 6, Indels: 3
0.79 0.14 0.07
Matches are distributed among these distances:
18 3 0.09
19 20 0.59
20 11 0.32
ACGTcount: A:0.78, C:0.02, G:0.03, T:0.17
Consensus pattern (19 bp):
AAAAAAAATAAAAATAAAT
Found at i:18763 original size:20 final size:20
Alignment explanation
Indices: 18712--18756 Score: 65
Period size: 22 Copynumber: 2.2 Consensus size: 20
18702 AATTTTATAG
18712 AAAAATAATAAAATAAATAAAC
1 AAAAATAA-AAAA-AAATAAAC
18734 AAAAATAAAAAAAAATAAA-
1 AAAAATAAAAAAAAATAAAC
18753 AAAA
1 AAAA
18757 GTGAAAATTA
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
19 4 0.17
20 7 0.30
21 4 0.17
22 8 0.35
ACGTcount: A:0.84, C:0.02, G:0.00, T:0.13
Consensus pattern (20 bp):
AAAAATAAAAAAAAATAAAC
Found at i:19894 original size:20 final size:18
Alignment explanation
Indices: 19845--19907 Score: 58
Period size: 20 Copynumber: 3.3 Consensus size: 18
19835 TGGGCCTAAA
19845 AATAATATAAAATAAAT-T
1 AATAA-ATAAAATAAATAT
19863 AATAAA-ATAAATAAACATAT
1 AATAAATA-AAAT-AA-ATAT
19883 AATAAATAAAATTAAATAAT
1 AATAAATAAAA-TAAAT-AT
19903 AATAA
1 AATAA
19908 TATATTATAT
Statistics
Matches: 38, Mismatches: 0, Indels: 12
0.76 0.00 0.24
Matches are distributed among these distances:
16 1 0.03
17 5 0.13
18 7 0.18
19 4 0.11
20 19 0.50
21 2 0.05
ACGTcount: A:0.70, C:0.02, G:0.00, T:0.29
Consensus pattern (18 bp):
AATAAATAAAATAAATAT
Found at i:19910 original size:28 final size:27
Alignment explanation
Indices: 19841--19911 Score: 67
Period size: 28 Copynumber: 2.6 Consensus size: 27
19831 GACATGGGCC
* *
19841 TAAA-AATAAT-ATAAAATAAATTAAT
1 TAAATAATAATAATATAATAAATAAAT
*
19866 AAAATAAATAA-ACATATAATAAATAAAAT
1 TAAAT-AATAATA-ATATAATAAAT-AAAT
19895 TAAATAATAATAATATA
1 TAAATAATAATAATATA
19912 TTATATATAA
Statistics
Matches: 36, Mismatches: 4, Indels: 9
0.73 0.08 0.18
Matches are distributed among these distances:
25 3 0.08
27 5 0.14
28 20 0.56
29 8 0.22
ACGTcount: A:0.69, C:0.01, G:0.00, T:0.30
Consensus pattern (27 bp):
TAAATAATAATAATATAATAAATAAAT
Found at i:19945 original size:22 final size:22
Alignment explanation
Indices: 19915--19958 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 22
19905 TAATATATTA
19915 TATATAAAAAATATTTTTAAAAAC
1 TATA-AAAAAATA-TTTTAAAAAC
19939 TATAAAAAAATATTTTAAAA
1 TATAAAAAAATATTTTAAAA
19959 CTACATATTA
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
22 8 0.40
23 8 0.40
24 4 0.20
ACGTcount: A:0.61, C:0.02, G:0.00, T:0.36
Consensus pattern (22 bp):
TATAAAAAAATATTTTAAAAAC
Found at i:19995 original size:23 final size:25
Alignment explanation
Indices: 19951--20008 Score: 89
Period size: 25 Copynumber: 2.3 Consensus size: 25
19941 TAAAAAAATA
19951 TTTTAAAACTACATATTATATATGT
1 TTTTAAAACTACATATTATATATGT
* *
19976 TTTTAAAACTATATATTATATAAGT
1 TTTTAAAACTACATATTATATATGT
*
20001 TTTCAAAA
1 TTTTAAAA
20009 ATGTTTTTAA
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 30 1.00
ACGTcount: A:0.43, C:0.07, G:0.03, T:0.47
Consensus pattern (25 bp):
TTTTAAAACTACATATTATATATGT
Found at i:20013 original size:37 final size:37
Alignment explanation
Indices: 19972--20268 Score: 410
Period size: 37 Copynumber: 8.1 Consensus size: 37
19962 CATATTATAT
*
19972 ATGTTTTTAAAACTATATATTATATAAGTTTTCAAAA
1 ATGTTTTAAAAACTATATATTATATAAGTTTTCAAAA
* *
20009 ATGTTTTTAAAACTATATATTATATAAGTTTTCAGAA
1 ATGTTTTAAAAACTATATATTATATAAGTTTTCAAAA
* *
20046 ATGTTTTCAAAACTATATATTATATAAGTTTT-TAAA
1 ATGTTTTAAAAACTATATATTATATAAGTTTTCAAAA
**
20082 ATGATTTTAAAAACTATATATTATATATTTTTTC-AAA
1 ATG-TTTTAAAAACTATATATTATATAAGTTTTCAAAA
*
20119 ATGTTTTAAAAACTATATATTATAT-AGATTTCAAAA
1 ATGTTTTAAAAACTATATATTATATAAGTTTTCAAAA
20155 ATGTTTTAAAAACTATATATTATATATA-TTTTC-AAA
1 ATGTTTTAAAAACTATATATTATATA-AGTTTTCAAAA
*
20191 ATGTTTTAAAAACTATATATTATATACATATTTTC-AAA
1 ATGTTTTAAAAACTATATATTATATA-A-GTTTTCAAAA
20229 ATGTTTTAAAAACTATATATTATATATA-TATTTCAAAA
1 ATGTTTTAAAAACTATATATTATATA-AGT-TTTCAAAA
20267 AT
1 AT
20269 CAATTGTAAA
Statistics
Matches: 238, Mismatches: 13, Indels: 17
0.89 0.05 0.06
Matches are distributed among these distances:
35 4 0.02
36 86 0.36
37 107 0.45
38 41 0.17
ACGTcount: A:0.44, C:0.06, G:0.04, T:0.46
Consensus pattern (37 bp):
ATGTTTTAAAAACTATATATTATATAAGTTTTCAAAA
Found at i:24317 original size:16 final size:16
Alignment explanation
Indices: 24292--24334 Score: 68
Period size: 16 Copynumber: 2.7 Consensus size: 16
24282 CCAACGTTTA
*
24292 TGTTCATTTATGTTCG
1 TGTTCGTTTATGTTCG
*
24308 TGTTCGTTTATGTTTG
1 TGTTCGTTTATGTTCG
24324 TGTTCGTTTAT
1 TGTTCGTTTAT
24335 TTTATTAAAT
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 25 1.00
ACGTcount: A:0.09, C:0.09, G:0.21, T:0.60
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:24421 original size:16 final size:16
Alignment explanation
Indices: 24400--24430 Score: 62
Period size: 16 Copynumber: 1.9 Consensus size: 16
24390 AAAAGAATTT
24400 TGTTCGTTTATGTTCG
1 TGTTCGTTTATGTTCG
24416 TGTTCGTTTATGTTC
1 TGTTCGTTTATGTTC
24431 ATTTATTTAT
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 15 1.00
ACGTcount: A:0.06, C:0.13, G:0.23, T:0.58
Consensus pattern (16 bp):
TGTTCGTTTATGTTCG
Found at i:25960 original size:16 final size:16
Alignment explanation
Indices: 25939--25971 Score: 57
Period size: 16 Copynumber: 2.1 Consensus size: 16
25929 TAATAAATAA
*
25939 ACGAACATACACGAAC
1 ACGAACATAAACGAAC
25955 ACGAACATAAACGAAC
1 ACGAACATAAACGAAC
25971 A
1 A
25972 AATTTTTTTT
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 16 1.00
ACGTcount: A:0.55, C:0.27, G:0.12, T:0.06
Consensus pattern (16 bp):
ACGAACATAAACGAAC
Found at i:26051 original size:10 final size:10
Alignment explanation
Indices: 26036--26090 Score: 56
Period size: 10 Copynumber: 5.1 Consensus size: 10
26026 CATTTAAATG
26036 ATAAACGAAC
1 ATAAACGAAC
26046 ATAAACGAAC
1 ATAAACGAAC
*
26056 ACAAACGAATGAAC
1 ATAAAC----GAAC
*
26070 ATAAACGAAA
1 ATAAACGAAC
26080 ATAAACGAAC
1 ATAAACGAAC
26090 A
1 A
26091 ACACAAACAC
Statistics
Matches: 37, Mismatches: 4, Indels: 8
0.76 0.08 0.16
Matches are distributed among these distances:
10 28 0.76
14 9 0.24
ACGTcount: A:0.62, C:0.18, G:0.11, T:0.09
Consensus pattern (10 bp):
ATAAACGAAC
Found at i:26074 original size:24 final size:24
Alignment explanation
Indices: 26042--26088 Score: 76
Period size: 24 Copynumber: 2.0 Consensus size: 24
26032 AATGATAAAC
*
26042 GAACATAAACGAACACAAACGAAT
1 GAACATAAACGAAAACAAACGAAT
*
26066 GAACATAAACGAAAATAAACGAA
1 GAACATAAACGAAAACAAACGAA
26089 CAACACAAAC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
24 21 1.00
ACGTcount: A:0.62, C:0.17, G:0.13, T:0.09
Consensus pattern (24 bp):
GAACATAAACGAAAACAAACGAAT
Found at i:26783 original size:16 final size:15
Alignment explanation
Indices: 26728--26830 Score: 73
Period size: 15 Copynumber: 6.3 Consensus size: 15
26718 GTAAAAAAGT
26728 GAAAATGAATAAATCAAA
1 GAAAAT-AA-AAAT-AAA
26746 GAAAATAAAAATAAA
1 GAAAATAAAAATAAA
*
26761 GAAAATAGAAATAAA
1 GAAAATAAAAATAAA
*
26776 GCAAAATAAATAAATGAAT
1 G-AAAAT-AA-AAAT-AAA
* *
26795 GAATAAGATAAATAAA
1 GAA-AATAAAAATAAA
*
26811 GTAAAATAAAGA-AAA
1 G-AAAATAAAAATAAA
26826 GAAAA
1 GAAAA
26831 AATGAATAAA
Statistics
Matches: 70, Mismatches: 9, Indels: 16
0.74 0.09 0.17
Matches are distributed among these distances:
14 4 0.06
15 22 0.31
16 17 0.24
17 9 0.13
18 13 0.19
19 5 0.07
ACGTcount: A:0.71, C:0.02, G:0.12, T:0.16
Consensus pattern (15 bp):
GAAAATAAAAATAAA
Found at i:26946 original size:14 final size:14
Alignment explanation
Indices: 26924--26958 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
26914 ATATAGTACT
*
26924 TAAATAAAAATAAA
1 TAAAGAAAAATAAA
26938 TAAAGAAAAATAAA
1 TAAAGAAAAATAAA
26952 T-AAGAAA
1 TAAAGAAA
26959 TTAAAATATT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
13 6 0.30
14 14 0.70
ACGTcount: A:0.77, C:0.00, G:0.06, T:0.17
Consensus pattern (14 bp):
TAAAGAAAAATAAA
Found at i:27037 original size:13 final size:12
Alignment explanation
Indices: 27016--27100 Score: 57
Period size: 12 Copynumber: 6.8 Consensus size: 12
27006 TAAATACTGG
*
27016 AAAATATAATAA
1 AAAAAATAATAA
27028 GAAAAAATAATAA
1 -AAAAAATAATAA
*
27041 ATAAGAATAATAA
1 A-AAAAATAATAA
27054 TGCTAAAAAAT--TAA
1 ----AAAAAATAATAA
*
27068 AGAAAATAATAA
1 AAAAAATAATAA
*
27080 AAATAATAATAA
1 AAAAAATAATAA
*
27092 AAATAATAA
1 AAAAAATAA
27101 AAGAAACAAA
Statistics
Matches: 59, Mismatches: 6, Indels: 15
0.74 0.08 0.19
Matches are distributed among these distances:
10 6 0.10
12 23 0.39
13 21 0.36
14 3 0.05
16 5 0.08
17 1 0.02
ACGTcount: A:0.72, C:0.01, G:0.05, T:0.22
Consensus pattern (12 bp):
AAAAAATAATAA
Found at i:27179 original size:10 final size:9
Alignment explanation
Indices: 27163--27213 Score: 50
Period size: 10 Copynumber: 5.3 Consensus size: 9
27153 ATAAAACGAA
27163 ATAAATAAT
1 ATAAATAAT
27172 ATACAATAAT
1 ATA-AATAAT
27182 AATAAATAAT
1 -ATAAATAAT
27192 A-ATAATAAT
1 ATA-AATAAT
*
27201 AATAATTAAT
1 -ATAAATAAT
27211 ATA
1 ATA
27214 TAAATGACTG
Statistics
Matches: 36, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
8 1 0.03
9 13 0.36
10 18 0.50
11 4 0.11
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (9 bp):
ATAAATAAT
Found at i:27182 original size:3 final size:3
Alignment explanation
Indices: 27166--27216 Score: 57
Period size: 3 Copynumber: 15.7 Consensus size: 3
27156 AAACGAAATA
*
27166 AAT AAT ATAC AAT AAT AAT AAAT AAT AAT AAT AAT AAT AATT AAT ATAT
1 AAT AAT A-AT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AA-T AAT A-AT
27215 AA
1 AA
27217 ATGACTGAAT
Statistics
Matches: 42, Mismatches: 2, Indels: 8
0.81 0.04 0.15
Matches are distributed among these distances:
3 31 0.74
4 11 0.26
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:27184 original size:13 final size:13
Alignment explanation
Indices: 27166--27216 Score: 68
Period size: 13 Copynumber: 3.9 Consensus size: 13
27156 AAACGAAATA
*
27166 AATAATATACAAT
1 AATAATATATAAT
*
27179 AATAATAAATAAT
1 AATAATATATAAT
27192 AATAATA-ATAAT
1 AATAATATATAAT
27204 AATTAATATATAA
1 AA-TAATATATAA
27217 ATGACTGAAT
Statistics
Matches: 34, Mismatches: 2, Indels: 3
0.87 0.05 0.08
Matches are distributed among these distances:
12 7 0.21
13 23 0.68
14 4 0.12
ACGTcount: A:0.65, C:0.02, G:0.00, T:0.33
Consensus pattern (13 bp):
AATAATATATAAT
Found at i:27737 original size:2 final size:2
Alignment explanation
Indices: 27730--27808 Score: 158
Period size: 2 Copynumber: 39.5 Consensus size: 2
27720 CCAAACATAA
27730 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
27772 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
27809 GTTATTGCAT
Statistics
Matches: 77, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 77 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:28210 original size:23 final size:23
Alignment explanation
Indices: 28184--28252 Score: 93
Period size: 23 Copynumber: 3.0 Consensus size: 23
28174 CACCACAGCT
* *
28184 CGTATAAATGCACCGAAGTGCCA
1 CGTAGAAATACACCGAAGTGCCA
* * *
28207 CGTAGAATTACACCTAAGTGCCG
1 CGTAGAAATACACCGAAGTGCCA
28230 CGTAGAAATACACCGAAGTGCCA
1 CGTAGAAATACACCGAAGTGCCA
28253 TATAAGATGT
Statistics
Matches: 38, Mismatches: 8, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
23 38 1.00
ACGTcount: A:0.35, C:0.26, G:0.22, T:0.17
Consensus pattern (23 bp):
CGTAGAAATACACCGAAGTGCCA
Found at i:28532 original size:30 final size:29
Alignment explanation
Indices: 28479--28537 Score: 73
Period size: 30 Copynumber: 2.0 Consensus size: 29
28469 TGTAAACATA
* *
28479 TCACATATTCATATAAACTCGTAGCTTCAT
1 TCACATATACATATAAACACGTAG-TTCAT
* *
28509 TCACATATACATGTAATCACGTAGTTCAT
1 TCACATATACATATAAACACGTAGTTCAT
28538 GTAAATTCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
29 5 0.20
30 20 0.80
ACGTcount: A:0.34, C:0.22, G:0.08, T:0.36
Consensus pattern (29 bp):
TCACATATACATATAAACACGTAGTTCAT
Found at i:32517 original size:42 final size:44
Alignment explanation
Indices: 32458--32569 Score: 124
Period size: 43 Copynumber: 2.6 Consensus size: 44
32448 CTTTGAATTG
* *
32458 GATATCCTTCGTTGTGAAGTTGAAATCCA-GTGTTGT-T-GACAC
1 GATATCCTTCGTCGTGAAGTTGAAATCAATG-GTTGTGTGGACAC
* * *
32500 GATATCCTTCATCGTGAAGTTAAAAT-AATGGTTGTGTGGGCAC
1 GATATCCTTCGTCGTGAAGTTGAAATCAATGGTTGTGTGGACAC
* *
32543 GATATCCTCCGTCGTGGAGTTGAAATC
1 GATATCCTTCGTCGTGAAGTTGAAATC
32570 GTGGATTTAT
Statistics
Matches: 57, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
41 6 0.11
42 25 0.44
43 26 0.46
ACGTcount: A:0.25, C:0.17, G:0.25, T:0.33
Consensus pattern (44 bp):
GATATCCTTCGTCGTGAAGTTGAAATCAATGGTTGTGTGGACAC
Found at i:48496 original size:3 final size:3
Alignment explanation
Indices: 48488--48514 Score: 54
Period size: 3 Copynumber: 9.0 Consensus size: 3
48478 GAATTGGGTT
48488 TTG TTG TTG TTG TTG TTG TTG TTG TTG
1 TTG TTG TTG TTG TTG TTG TTG TTG TTG
48515 GTTGATCGGA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 24 1.00
ACGTcount: A:0.00, C:0.00, G:0.33, T:0.67
Consensus pattern (3 bp):
TTG
Found at i:48793 original size:15 final size:15
Alignment explanation
Indices: 48766--48857 Score: 66
Period size: 14 Copynumber: 6.1 Consensus size: 15
48756 GTGAAAATGA
48766 ATAAATCAAAGAAAAT
1 ATAAAT-AAAGAAAAT
*
48782 AGAAATAAAGAAAA-
1 ATAAATAAAGAAAAT
*
48796 ATAAATAAATAAAA-
1 ATAAATAAAGAAAAT
*
48810 AAATAATAAA-AAAAT
1 ATA-AATAAAGAAAAT
* *
48825 GAATAAGATAAATAAAGT
1 --ATAA-ATAAAGAAAAT
48843 A-AAATAAAGAAAAT
1 ATAAATAAAGAAAAT
48857 A
1 A
48858 AAAAATAAAA
Statistics
Matches: 62, Mismatches: 8, Indels: 14
0.74 0.10 0.17
Matches are distributed among these distances:
14 28 0.45
15 16 0.26
16 7 0.11
17 7 0.11
18 4 0.06
ACGTcount: A:0.74, C:0.01, G:0.08, T:0.17
Consensus pattern (15 bp):
ATAAATAAAGAAAAT
Found at i:48801 original size:14 final size:14
Alignment explanation
Indices: 48765--48906 Score: 71
Period size: 15 Copynumber: 9.9 Consensus size: 14
48755 AGTGAAAATG
48765 AATAAATCAAAGAAA
1 AATAAAT-AAAGAAA
*
48780 ATAGAAATAAAGAAA
1 A-ATAAATAAAGAAA
*
48795 AATAAATAAA-TAA
1 AATAAATAAAGAAA
*
48808 AA-AAATAATAAAAA
1 AATAAATAA-AGAAA
* *
48822 AATGAAT-AAGATA
1 AATAAATAAAGAAA
48835 AATAAAGTAAA-ATAA
1 AATAAA-TAAAGA-AA
48850 AGA-AAATAAA-AAA
1 A-ATAAATAAAGAAA
*
48863 TAAAAAATAAAAGAAAA
1 -AATAAAT-AAAG-AAA
* *
48880 AATGAATAAAGGAA
1 AATAAATAAAGAAA
*
48894 AATGAAAAAAAGA
1 AAT-AAATAAAGA
48907 TAGTAACAAA
Statistics
Matches: 98, Mismatches: 15, Indels: 28
0.70 0.11 0.20
Matches are distributed among these distances:
12 6 0.06
13 16 0.16
14 30 0.31
15 32 0.33
16 11 0.11
17 3 0.03
ACGTcount: A:0.75, C:0.01, G:0.09, T:0.15
Consensus pattern (14 bp):
AATAAATAAAGAAA
Found at i:48803 original size:4 final size:4
Alignment explanation
Indices: 48794--48873 Score: 67
Period size: 4 Copynumber: 19.8 Consensus size: 4
48784 AAATAAAGAA
* * *
48794 AAAT AAAT AAAT AAAA AAAT -AAT AAAA AAAT GAAT AAGAT AAAT AAAGT
1 AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AAAT AA-AT AAAT AAA-T
*
48843 AAAAT AAAGA AAAT AAA- AAAT AAA- AAAT AAA
1 -AAAT AAA-T AAAT AAAT AAAT AAAT AAAT AAA
48874 AGAAAAAATG
Statistics
Matches: 61, Mismatches: 8, Indels: 14
0.73 0.10 0.17
Matches are distributed among these distances:
3 9 0.15
4 40 0.66
5 9 0.15
6 3 0.05
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (4 bp):
AAAT
Found at i:48819 original size:19 final size:19
Alignment explanation
Indices: 48784--48889 Score: 72
Period size: 19 Copynumber: 5.4 Consensus size: 19
48774 AAGAAAATAG
*
48784 AAATAAAGAAA-AATAAAT
1 AAATAAAAAAATAATAAAT
*
48802 AAATAAAAAAATAATAAAA
1 AAATAAAAAAATAATAAAT
* *
48821 AAATGAATAAGATAAATAAAGT
1 AAAT-AAAAAAAT-AATAAA-T
*
48843 AAAATAAAGAAAATAAAAAAT
1 -AAATAAA-AAAATAATAAAT
* *
48864 AAA-AAATAAAAGAAAAAAT
1 AAATAAA-AAAATAATAAAT
*
48883 GAATAAA
1 AAATAAA
48890 GGAAAATGAA
Statistics
Matches: 70, Mismatches: 11, Indels: 12
0.75 0.12 0.13
Matches are distributed among these distances:
18 10 0.14
19 26 0.37
20 12 0.17
21 7 0.10
22 7 0.10
23 8 0.11
ACGTcount: A:0.77, C:0.00, G:0.07, T:0.16
Consensus pattern (19 bp):
AAATAAAAAAATAATAAAT
Found at i:48838 original size:50 final size:49
Alignment explanation
Indices: 48759--48904 Score: 136
Period size: 50 Copynumber: 2.9 Consensus size: 49
48749 TAAAAAAGTG
* * * * *
48759 AAAATGAATAAATCAAAGAAAATAGAAATAAAGAAAAATAAA-TAAATAAA
1 AAAAT-AAAAAATAAAAGAAAAAATAAATAAAGAAAAATAAAGAAAAT-AA
* * *
48809 AAAATAATAAAA-AAATGAATAAGATAAATAAAGTAAAATAAAGAAAATAA
1 AAAATAA-AAAATAAAAGAA-AAAATAAATAAAGAAAAATAAAGAAAATAA
* *
48859 AAAATAAAAAATAAAAGAAAAAATGAATAAAGGAAAATGAAA-AAAA
1 AAAATAAAAAATAAAAGAAAAAATAAATAAAGAAAAAT-AAAGAAAA
48905 GATAGTAACA
Statistics
Matches: 80, Mismatches: 11, Indels: 11
0.78 0.11 0.11
Matches are distributed among these distances:
49 31 0.39
50 45 0.56
51 4 0.05
ACGTcount: A:0.75, C:0.01, G:0.09, T:0.15
Consensus pattern (49 bp):
AAAATAAAAAATAAAAGAAAAAATAAATAAAGAAAAATAAAGAAAATAA
Found at i:48867 original size:6 final size:7
Alignment explanation
Indices: 48792--48874 Score: 55
Period size: 7 Copynumber: 11.4 Consensus size: 7
48782 AGAAATAAAG
48792 AAAAATA
1 AAAAATA
48799 AATAAATA
1 AA-AAATA
48807 AAAAA-A
1 AAAAATA
* *
48813 TAATA-A
1 AAAAATA
48819 AAAAATGA
1 AAAAAT-A
*
48827 ATAAGATA
1 A-AAAATA
48835 AATAAAGTA
1 AA-AAA-TA
48844 AAATAA-A
1 AAA-AATA
*
48851 GAAAATA
1 AAAAATA
48858 AAAAATA
1 AAAAATA
48865 AAAAATA
1 AAAAATA
48872 AAA
1 AAA
48875 GAAAAAATGA
Statistics
Matches: 60, Mismatches: 8, Indels: 16
0.71 0.10 0.19
Matches are distributed among these distances:
6 10 0.17
7 26 0.43
8 14 0.23
9 10 0.17
ACGTcount: A:0.78, C:0.00, G:0.05, T:0.17
Consensus pattern (7 bp):
AAAAATA
Found at i:48941 original size:3 final size:3
Alignment explanation
Indices: 48933--48967 Score: 70
Period size: 3 Copynumber: 11.7 Consensus size: 3
48923 AAATAACTAT
48933 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA AT
48968 CCAATATAGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 32 1.00
ACGTcount: A:0.66, C:0.00, G:0.00, T:0.34
Consensus pattern (3 bp):
ATA
Found at i:49005 original size:14 final size:13
Alignment explanation
Indices: 48986--49029 Score: 54
Period size: 14 Copynumber: 3.2 Consensus size: 13
48976 GTACTTAAAT
48986 AAAAATAAATGAAG
1 AAAAATAAAT-AAG
49000 AAAAATTAAA-AAG
1 AAAAA-TAAATAAG
49013 AAAAAATAAATAAG
1 -AAAAATAAATAAG
49027 AAA
1 AAA
49030 TTAAAATATT
Statistics
Matches: 27, Mismatches: 0, Indels: 7
0.79 0.00 0.21
Matches are distributed among these distances:
13 10 0.37
14 13 0.48
15 4 0.15
ACGTcount: A:0.77, C:0.00, G:0.09, T:0.14
Consensus pattern (13 bp):
AAAAATAAATAAG
Found at i:49037 original size:17 final size:18
Alignment explanation
Indices: 49015--49055 Score: 50
Period size: 17 Copynumber: 2.4 Consensus size: 18
49005 TTAAAAAGAA
*
49015 AAAATAAATA-AGAAATT
1 AAAATAAATAGAGAAATC
*
49032 AAAAT-ATTAGAGAAATC
1 AAAATAAATAGAGAAATC
49049 AAAATAA
1 AAAATAA
49056 GAAAAAACAT
Statistics
Matches: 20, Mismatches: 2, Indels: 3
0.80 0.08 0.12
Matches are distributed among these distances:
16 3 0.15
17 16 0.80
18 1 0.05
ACGTcount: A:0.68, C:0.02, G:0.07, T:0.22
Consensus pattern (18 bp):
AAAATAAATAGAGAAATC
Found at i:49058 original size:44 final size:41
Alignment explanation
Indices: 49001--49103 Score: 102
Period size: 44 Copynumber: 2.5 Consensus size: 41
48991 TAAATGAAGA
* *
49001 AAAATTAAA-AAGAAAAAATAAATA-AGAAATTAAAATATTAG
1 AAAATAAAATAAGAAAAAACAAATATA-AAA-TAAAATATTAG
* * *
49042 AGAAATCAAAATAAGAAAAAACATATATATAATAAAATATTGG
1 A-AAAT-AAAATAAGAAAAAACAAATATAAAATAAAATATTAG
*
49085 AAAATATAATAAGAAAAAA
1 AAAATAAAATAAGAAAAAA
49104 ATAATAATAA
Statistics
Matches: 52, Mismatches: 6, Indels: 8
0.79 0.09 0.12
Matches are distributed among these distances:
41 14 0.27
42 8 0.15
43 14 0.27
44 15 0.29
45 1 0.02
ACGTcount: A:0.69, C:0.02, G:0.08, T:0.21
Consensus pattern (41 bp):
AAAATAAAATAAGAAAAAACAAATATAAAATAAAATATTAG
Found at i:49117 original size:41 final size:41
Alignment explanation
Indices: 49001--49122 Score: 117
Period size: 41 Copynumber: 2.9 Consensus size: 41
48991 TAAATGAAGA
* *
49001 AAAAT-TAAAAAG-AAAAAATAAATAAGAAATTAAAATATTAG
1 AAAATATAATAAGAAAAAAAT-AATAATAAA-TAAAATATTAG
* *
49042 AGAAATCAAAATAAGAAAAAACAT-AT-ATATAATAAAATATTGG
1 A-AAAT-ATAATAAGAAAAAA-ATAATAATA-AATAAAATATTAG
49085 AAAATATAATAAGAAAAAAATAATAATAAATAAGAATA
1 AAAATATAATAAGAAAAAAATAATAATAAATAA-AATA
49123 ATAATGCTAA
Statistics
Matches: 67, Mismatches: 5, Indels: 17
0.75 0.06 0.19
Matches are distributed among these distances:
40 2 0.03
41 21 0.31
42 15 0.22
43 13 0.19
44 9 0.13
45 5 0.07
46 2 0.03
ACGTcount: A:0.69, C:0.02, G:0.07, T:0.22
Consensus pattern (41 bp):
AAAATATAATAAGAAAAAAATAATAATAAATAAAATATTAG
Found at i:49225 original size:26 final size:27
Alignment explanation
Indices: 49190--49248 Score: 75
Period size: 26 Copynumber: 2.1 Consensus size: 27
49180 CAAATATACC
*
49190 TATATATATATTAATAATAAAATAAA-AA
1 TATATATATA-TAA-AACAAAATAAATAA
*
49218 TATGTATATATAAAACAAAATAAATAA
1 TATATATATATAAAACAAAATAAATAA
49245 TATA
1 TATA
49249 CAATAATAAT
Statistics
Matches: 27, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
26 10 0.37
27 8 0.30
28 9 0.33
ACGTcount: A:0.63, C:0.02, G:0.02, T:0.34
Consensus pattern (27 bp):
TATATATATATAAAACAAAATAAATAA
Found at i:49253 original size:10 final size:11
Alignment explanation
Indices: 49236--49294 Score: 63
Period size: 10 Copynumber: 5.5 Consensus size: 11
49226 TATAAAACAA
49236 AATA-AATAAT
1 AATACAATAAT
49246 -ATACAATAAT
1 AATACAATAAT
49256 AATA-AATAAT
1 AATACAATAAT
49266 AATAACAATAAT
1 AAT-ACAATAAT
*
49278 AATA-ATTAAT
1 AATACAATAAT
49288 ACATACA
1 A-ATACA
49295 TGTAAGAGAC
Statistics
Matches: 42, Mismatches: 1, Indels: 10
0.79 0.02 0.19
Matches are distributed among these distances:
9 3 0.07
10 21 0.50
11 8 0.19
12 10 0.24
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (11 bp):
AATACAATAAT
Found at i:49256 original size:3 final size:3
Alignment explanation
Indices: 49240--49288 Score: 53
Period size: 3 Copynumber: 15.3 Consensus size: 3
49230 AAACAAAATA
* *
49240 AAT AAT ATAC AAT AAT AAT AAAT AAT AAT AAC AAT AAT AAT AATT AAT
1 AAT AAT A-AT AAT AAT AAT -AAT AAT AAT AAT AAT AAT AAT AA-T AAT
49288 A
1 A
49289 CATACATGTA
Statistics
Matches: 39, Mismatches: 4, Indels: 6
0.80 0.08 0.12
Matches are distributed among these distances:
3 31 0.79
4 8 0.21
ACGTcount: A:0.65, C:0.04, G:0.00, T:0.31
Consensus pattern (3 bp):
AAT
Found at i:49276 original size:22 final size:21
Alignment explanation
Indices: 49236--49294 Score: 84
Period size: 22 Copynumber: 2.8 Consensus size: 21
49226 TATAAAACAA
49236 AATAAATAAT-ATACAATAAT
1 AATAAATAATAATACAATAAT
49256 AATAAATAATAATAACAATAAT
1 AATAAATAATAAT-ACAATAAT
*
49278 AATAATTAATACATACA
1 AATAAATAATA-ATACA
49295 TGTAAGAGAC
Statistics
Matches: 35, Mismatches: 1, Indels: 4
0.88 0.03 0.10
Matches are distributed among these distances:
20 10 0.29
21 2 0.06
22 21 0.60
23 2 0.06
ACGTcount: A:0.64, C:0.07, G:0.00, T:0.29
Consensus pattern (21 bp):
AATAAATAATAATACAATAAT
Found at i:50166 original size:21 final size:22
Alignment explanation
Indices: 50137--50178 Score: 59
Period size: 21 Copynumber: 2.0 Consensus size: 22
50127 TTGTTGGAGT
50137 GTTGTCATGAAAAACGACAACG
1 GTTGTCATGAAAAACGACAACG
* *
50159 GTTG-CATGAAGAACGGCAAC
1 GTTGTCATGAAAAACGACAAC
50179 TGGCATGAGG
Statistics
Matches: 18, Mismatches: 2, Indels: 1
0.86 0.10 0.05
Matches are distributed among these distances:
21 14 0.78
22 4 0.22
ACGTcount: A:0.38, C:0.19, G:0.26, T:0.17
Consensus pattern (22 bp):
GTTGTCATGAAAAACGACAACG
Found at i:54053 original size:14 final size:14
Alignment explanation
Indices: 54036--54062 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
54026 TCTCTAACCC
54036 CTGTTTTCTACAGT
1 CTGTTTTCTACAGT
54050 CTGTTTTCTACAG
1 CTGTTTTCTACAG
54063 CTATCACTAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.15, C:0.22, G:0.15, T:0.48
Consensus pattern (14 bp):
CTGTTTTCTACAGT
Found at i:68798 original size:30 final size:30
Alignment explanation
Indices: 68764--68834 Score: 108
Period size: 30 Copynumber: 2.4 Consensus size: 30
68754 TTTAATTACT
*
68764 TTTTAGTCAC-TTAAATTTCTATTTTTGCTA
1 TTTTAGTC-CTTTAAATTTCTATTTTAGCTA
68794 TTTTAGTCCTTTAAATTTCTATTTTAGCTA
1 TTTTAGTCCTTTAAATTTCTATTTTAGCTA
*
68824 TTTTAGCCCTT
1 TTTTAGTCCTT
68835 CAAGCTTGGT
Statistics
Matches: 38, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
29 1 0.03
30 37 0.97
ACGTcount: A:0.21, C:0.15, G:0.07, T:0.56
Consensus pattern (30 bp):
TTTTAGTCCTTTAAATTTCTATTTTAGCTA
Found at i:74908 original size:61 final size:60
Alignment explanation
Indices: 74834--74960 Score: 132
Period size: 61 Copynumber: 2.1 Consensus size: 60
74824 CACTCTTCTT
* * * *
74834 AAGACAAACTTTGA-AATGTTTCTCTTG-AAAGAAAATTTTATCTCTTGAGACAGTTTCTTTTG
1 AAGA-AAAATTTGAGAATGTTTAT-TTGAAAACAAAATTGTATCT-TTGAGACAGTTTC-TTTG
** * *
74896 AAGAAAAATTTGAGTTTGTTTATTTGAAAACAAAATTGTCTCTTTGAGATAGTTTCTTTG
1 AAGAAAAATTTGAGAATGTTTATTTGAAAACAAAATTGTATCTTTGAGACAGTTTCTTTG
74956 AAGAA
1 AAGAA
74961 TTTTTTTTTG
Statistics
Matches: 55, Mismatches: 8, Indels: 6
0.80 0.12 0.09
Matches are distributed among these distances:
60 9 0.16
61 23 0.42
62 23 0.42
ACGTcount: A:0.35, C:0.09, G:0.16, T:0.40
Consensus pattern (60 bp):
AAGAAAAATTTGAGAATGTTTATTTGAAAACAAAATTGTATCTTTGAGACAGTTTCTTTG
Done.