genome.fa.s2041.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002041.1 Hibiscus syriacus cultivar Beakdansim tig00004162_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69725

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4858--4913	28	2.0	28	92	0	94	37	23	12	26	1.90
5183--5471	127	2.3	123	92	3	463	24	24	17	33	1.96
8651--8725	36	2.1	36	97	0	141	28	28	17	26	1.98
10103--10127	2	12.5	2	100	0	50	52	0	0	48	1.00
15502--15718	69	3.1	68	75	13	194	48	9	8	33	1.66
15917--16220	100	3.0	95	84	7	365	42	10	11	34	1.76
16129--16296	76	2.2	76	89	2	246	43	10	13	32	1.78
16038--16396	176	2.0	176	86	3	499	42	10	12	34	1.78
16214--16420	100	2.1	100	89	1	317	43	12	10	33	1.75
17708--17743	2	18.0	2	100	0	72	50	0	0	50	1.00
17909--18147	126	1.9	126	100	0	478	19	19	12	48	1.80
28747--28816	26	2.7	27	84	4	90	54	0	2	42	1.15
30500--30538	21	1.9	20	85	15	53	12	5	38	43	1.65
30707--30749	20	2.1	21	95	4	79	32	18	18	30	1.95
30713--30756	20	2.2	20	91	0	70	31	18	15	34	1.92
32729--32760	14	2.3	14	94	0	55	56	18	15	9	1.66
32743--32801	24	2.5	24	91	0	91	54	18	16	10	1.70
32801--32839	10	3.9	10	82	0	51	61	10	10	17	1.55
33048--33088	14	2.9	14	88	0	64	63	14	7	14	1.50
33007--33081	24	3.1	23	73	7	69	60	17	8	14	1.58
37186--37664	239	2.0	239	100	0	958	30	15	20	34	1.93
44685--44720	2	18.0	2	100	0	72	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52925--52990	34	1.9	34	96	0	123	30	30	30	9	1.88
53058--53181	24	5.2	24	88	5	90	41	20	14	23	1.89
53075--53190	24	4.8	24	90	4	171	39	19	15	25	1.91
53075--53208	48	2.8	47	85	4	169	41	19	14	24	1.89
54915--54987	36	2.0	36	97	0	137	28	20	8	42	1.81
64935--65176	120	2.0	120	100	0	484	35	23	12	28	1.91

Tables:   1

The End!