genome.fa.s2042.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002042.1 Hibiscus syriacus cultivar Beakdansim tig00004163_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  124983

Tables:   1   

This is table  1  of  1  ( 47 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3919--3959	21	2.0	21	85	4	57	53	2	9	34	1.47
4350--4409	28	2.2	26	88	5	84	15	8	31	45	1.75
4935--4981	18	2.7	17	83	3	58	27	29	6	36	1.82
5504--5543	20	2.0	21	90	5	64	45	5	5	45	1.47
19506--19543	19	2.0	19	100	0	76	42	10	10	36	1.74
26474--26503	2	15.0	2	100	0	60	50	0	0	50	1.00
27807--27843	2	18.5	2	100	0	74	48	0	0	51	1.00
29388--29423	2	18.5	2	94	5	65	47	0	0	52	1.00
29479--29516	20	1.9	20	88	0	58	26	5	2	65	1.27
29527--29561	16	2.1	18	89	10	56	25	8	0	65	1.21
32747--32848	8	12.5	8	72	13	66	77	6	14	0	1.02
32747--32848	16	6.3	15	74	15	78	77	6	14	0	1.02
32815--32858	22	1.9	23	86	9	63	75	4	18	2	1.09
33483--33533	22	2.3	22	93	0	84	35	25	11	27	1.91
34452--34575	36	3.4	36	82	6	160	25	20	13	40	1.89
34551--34691	67	2.1	67	84	6	180	31	22	8	37	1.84
35351--36074	105	7.0	105	93	1	1158	33	26	17	22	1.96
35351--36074	207	3.5	208	91	2	1143	33	26	17	22	1.96
37283--37337	2	27.5	2	96	0	101	47	0	0	52	1.00
37381--37457	39	2.0	39	82	5	93	24	6	2	66	1.28
37442--37476	16	2.1	18	89	10	56	25	8	0	65	1.21
38009--38173	60	2.7	61	85	4	210	33	20	4	41	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41163--41257	3	31.7	3	100	0	190	67	0	0	32	0.91
49863--49930	29	2.3	29	84	5	82	48	2	19	29	1.63
49885--49944	29	2.1	29	100	0	120	45	6	18	30	1.75
51031--51080	20	2.5	20	100	0	100	34	20	18	28	1.95
52552--52585	2	17.0	2	93	0	59	52	0	0	47	1.00
53612--53642	3	10.3	3	100	0	62	35	0	0	64	0.94
53641--53677	13	2.8	13	88	11	58	62	0	0	37	0.96
67634--68267	83	7.7	83	95	1	1039	25	13	23	37	1.92
69006--69650	114	5.6	113	92	2	909	36	13	20	28	1.91
69787--69847	3	20.3	3	96	0	113	34	1	0	63	1.04
79579--79618	6	6.0	7	86	13	50	67	0	0	32	0.91
79579--79618	14	3.0	14	80	20	50	67	0	0	32	0.91
79577--79630	20	2.6	20	82	14	65	61	3	0	35	1.14
87994--88051	22	2.6	22	86	0	71	39	12	20	27	1.88
88089--88146	21	2.8	21	94	0	98	24	29	18	27	1.98
88716--88759	23	2.0	23	81	4	54	50	11	2	36	1.51
94656--94735	20	3.8	21	79	14	83	22	32	23	21	1.98
95103--95154	27	2.0	27	88	3	79	55	3	5	34	1.42
96689--96733	17	2.6	17	85	3	54	20	2	24	53	1.57
100893--100960	31	2.2	31	89	0	100	30	14	30	23	1.94
100901--100967	31	2.2	31	94	0	116	29	11	28	29	1.92
101493--101520	13	2.2	13	100	0	56	42	7	0	50	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
111454--111614	81	2.0	80	92	3	270	44	22	8	24	1.79
112230--112264	2	17.5	2	100	0	70	51	0	48	0	1.00
113204--113231	14	2.0	14	100	0	56	7	14	21	57	1.61

Tables:   1

The End!