Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01002044.1 Hibiscus syriacus cultivar Beakdansim tig00004165_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 76795
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
Found at i:819 original size:45 final size:45
Alignment explanation
Indices: 735--823 Score: 117
Period size: 46 Copynumber: 2.0 Consensus size: 45
725 TACTTTAGCA
735 CCACCGTCCACAGACATCAGACACGTGCTAAGTACCATATAGTAC
1 CCACCGTCCACAGACATCAGACACGTGCTAAGTACCATATAGTAC
* * * * *
780 CCACCGTCACACATACGTTAGACATGTGCTAAGT-TCATATAGTA
1 CCACCGTC-CACAGACATCAGACACGTGCTAAGTACCATATAGTA
824 GCATCATTGT
Statistics
Matches: 38, Mismatches: 5, Indels: 2
0.84 0.11 0.04
Matches are distributed among these distances:
45 17 0.45
46 21 0.55
ACGTcount: A:0.33, C:0.29, G:0.16, T:0.22
Consensus pattern (45 bp):
CCACCGTCCACAGACATCAGACACGTGCTAAGTACCATATAGTAC
Found at i:856 original size:47 final size:46
Alignment explanation
Indices: 735--857 Score: 133
Period size: 47 Copynumber: 2.7 Consensus size: 46
725 TACTTTAGCA
*
735 CCACCGTC-CACAGACATCAGACACGTGCTAAGTACCATATAGTAC
1 CCACCGTCACACAGACGTCAGACACGTGCTAAGTACCATATAGTAC
* * * *
780 CCACCGTCACACATACGTTAGACATGTGCTAAGT-TCATATAGTAGC
1 CCACCGTCACACAGACGTCAGACACGTGCTAAGTACCATATAGTA-C
* ** *
826 ATCATTGTCACATAGACGTCAGACACGTGCTA
1 -CCACCGTCACACAGACGTCAGACACGTGCTA
858 TAAGTATATG
Statistics
Matches: 63, Mismatches: 12, Indels: 4
0.80 0.15 0.05
Matches are distributed among these distances:
45 17 0.27
46 22 0.35
47 24 0.38
ACGTcount: A:0.32, C:0.28, G:0.17, T:0.23
Consensus pattern (46 bp):
CCACCGTCACACAGACGTCAGACACGTGCTAAGTACCATATAGTAC
Found at i:2920 original size:31 final size:31
Alignment explanation
Indices: 2876--2953 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
2866 TAATACAAAA
* *
2876 TTACCAATTTACCCTTAAAATTTAAATATCT
1 TTACCAAATTACCCTTAAAATTTAAATATAT
*
2907 TTACTAAATTACCCTTAAAATTTAAATATAT
1 TTACCAAATTACCCTTAAAATTTAAATATAT
*
2938 TTACCAATTTACCCTT
1 TTACCAAATTACCCTT
2954 TAATTTCATG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (31 bp):
TTACCAAATTACCCTTAAAATTTAAATATAT
Found at i:4851 original size:31 final size:31
Alignment explanation
Indices: 4807--4884 Score: 120
Period size: 31 Copynumber: 2.5 Consensus size: 31
4797 TAATACAAAA
* *
4807 TTACCAATTTACCCTTAAAATTTAAATATCT
1 TTACCAAATTACCCTTAAAATTTAAATATAT
*
4838 TTACTAAATTACCCTTAAAATTTAAATATAT
1 TTACCAAATTACCCTTAAAATTTAAATATAT
*
4869 TTACCAATTTACCCTT
1 TTACCAAATTACCCTT
4885 TAATTTCATG
Statistics
Matches: 42, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 42 1.00
ACGTcount: A:0.38, C:0.19, G:0.00, T:0.42
Consensus pattern (31 bp):
TTACCAAATTACCCTTAAAATTTAAATATAT
Found at i:20385 original size:13 final size:13
Alignment explanation
Indices: 20367--20393 Score: 54
Period size: 13 Copynumber: 2.1 Consensus size: 13
20357 TCTTGCGACA
20367 CGATCCGATAAAT
1 CGATCCGATAAAT
20380 CGATCCGATAAAT
1 CGATCCGATAAAT
20393 C
1 C
20394 AAGCCGAACC
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 14 1.00
ACGTcount: A:0.37, C:0.26, G:0.15, T:0.22
Consensus pattern (13 bp):
CGATCCGATAAAT
Found at i:32804 original size:20 final size:22
Alignment explanation
Indices: 32761--32808 Score: 73
Period size: 22 Copynumber: 2.3 Consensus size: 22
32751 ATTTTAAATT
*
32761 TTAACTATAAAAATATAGAAAA
1 TTAAATATAAAAATATAGAAAA
32783 TTAAATATAAAAA-ATA-AAAA
1 TTAAATATAAAAATATAGAAAA
32803 TTAAAT
1 TTAAAT
32809 TATTTAAAAT
Statistics
Matches: 25, Mismatches: 1, Indels: 2
0.89 0.04 0.07
Matches are distributed among these distances:
20 10 0.40
21 3 0.12
22 12 0.48
ACGTcount: A:0.67, C:0.02, G:0.02, T:0.29
Consensus pattern (22 bp):
TTAAATATAAAAATATAGAAAA
Found at i:32807 original size:14 final size:15
Alignment explanation
Indices: 32767--32807 Score: 50
Period size: 14 Copynumber: 2.9 Consensus size: 15
32757 AATTTTAACT
*
32767 ATAAAAATATAGAAA
1 ATAAAAATATAAAAA
*
32782 AT-TAAATATAAAAA
1 ATAAAAATATAAAAA
32796 ATAAAAAT-TAAA
1 ATAAAAATATAAA
32808 TTATTTAAAA
Statistics
Matches: 22, Mismatches: 3, Indels: 3
0.79 0.11 0.11
Matches are distributed among these distances:
14 16 0.73
15 6 0.27
ACGTcount: A:0.73, C:0.00, G:0.02, T:0.24
Consensus pattern (15 bp):
ATAAAAATATAAAAA
Found at i:33288 original size:22 final size:23
Alignment explanation
Indices: 33251--33310 Score: 77
Period size: 23 Copynumber: 2.5 Consensus size: 23
33241 AATTTATACC
*
33251 TAAATTTTAATTTTTATAA-CTTT
1 TAAATTTT-ATTTTTATAAGATTT
33274 TAAATTTTATTTTTATAAGATTT
1 TAAATTTTATTTTTATAAGATTT
33297 TATAATATTTATTT
1 TA-AAT-TTTATTT
33311 AATTAAATTT
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
22 10 0.30
23 13 0.39
24 3 0.09
25 7 0.21
ACGTcount: A:0.35, C:0.02, G:0.02, T:0.62
Consensus pattern (23 bp):
TAAATTTTATTTTTATAAGATTT
Found at i:33518 original size:24 final size:23
Alignment explanation
Indices: 33473--33538 Score: 66
Period size: 24 Copynumber: 2.9 Consensus size: 23
33463 TAATAATATA
33473 TTTTTAATTTTTTTAGTA---ATT
1 TTTTTAATTTTTTTA-TATTTATT
33494 TATTTTAATTTTTTTATATTTATT
1 T-TTTTAATTTTTTTATATTTATT
**
33518 TTTTTGAACATTTTTATATTT
1 TTTTT-AATTTTTTTATATTT
33539 TAAATTTAAA
Statistics
Matches: 38, Mismatches: 2, Indels: 7
0.81 0.04 0.15
Matches are distributed among these distances:
21 3 0.08
22 14 0.37
23 4 0.11
24 17 0.45
ACGTcount: A:0.24, C:0.02, G:0.03, T:0.71
Consensus pattern (23 bp):
TTTTTAATTTTTTTATATTTATT
Found at i:33521 original size:22 final size:23
Alignment explanation
Indices: 33466--33520 Score: 80
Period size: 22 Copynumber: 2.5 Consensus size: 23
33456 TAAAAAATAA
*
33466 TAATATATTTTTAATTTTTTTAG
1 TAATTTATTTTTAATTTTTTTAG
33489 TAATTTA-TTTTAATTTTTTTA-
1 TAATTTATTTTTAATTTTTTTAG
33510 T-ATTTATTTTT
1 TAATTTATTTTT
33521 TTGAACATTT
Statistics
Matches: 30, Mismatches: 1, Indels: 4
0.86 0.03 0.11
Matches are distributed among these distances:
20 5 0.17
21 5 0.17
22 14 0.47
23 6 0.20
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (23 bp):
TAATTTATTTTTAATTTTTTTAG
Found at i:33663 original size:23 final size:20
Alignment explanation
Indices: 33631--33684 Score: 65
Period size: 23 Copynumber: 2.6 Consensus size: 20
33621 GGAAAAAATA
*
33631 ATAATATATTTTAAATTTTTTT
1 ATAATTTATTTT-AA-TTTTTT
33653 AGTAATTTATTTTAATTTTTT
1 A-TAATTTATTTTAATTTTTT
33674 AT-ATTTATTTT
1 ATAATTTATTTT
33685 TTTGAACATT
Statistics
Matches: 30, Mismatches: 1, Indels: 5
0.83 0.03 0.14
Matches are distributed among these distances:
19 9 0.30
20 1 0.03
21 7 0.23
22 3 0.10
23 10 0.33
ACGTcount: A:0.31, C:0.00, G:0.02, T:0.67
Consensus pattern (20 bp):
ATAATTTATTTTAATTTTTT
Found at i:33717 original size:165 final size:167
Alignment explanation
Indices: 33416--33747 Score: 632
Period size: 165 Copynumber: 2.0 Consensus size: 167
33406 GGATAGACGA
*
33416 GTTCATGTTTATATAAATAAAAGTCAAGTTAAATTCAAGGTAAAAAATAATAATATATTTTTAAT
1 GTTCATGTTTATATAAATAAAAGTCAAGTTAAATTCAAGGTAAAAAATAATAATATATTTTAAAT
33481 TTTTTTAGTAATTTATTTTAATTTTTTTATATTTATTTTTTTGAACATTTTTATATTTTAAATTT
66 TTTTTTAGTAATTTATTTTAATTTTTTTATATTTATTTTTTTGAACATTTTTATATTTTAAATTT
33546 AAAATATTTTTATTTTTTCTAAAAAGATCGAATAAGT
131 AAAATATTTTTATTTTTTCTAAAAAGATCGAATAAGT
33583 GTTCATGTTTATATAAATAAAAGTCAAGTTAAATTCAAGG-AAAAAATAATAATATATTTTAAAT
1 GTTCATGTTTATATAAATAAAAGTCAAGTTAAATTCAAGGTAAAAAATAATAATATATTTTAAAT
33647 TTTTTTAGTAATTTATTTTAA-TTTTTTATATTTATTTTTTTGAACATTTTTATATTTTAAATTT
66 TTTTTTAGTAATTTATTTTAATTTTTTTATATTTATTTTTTTGAACATTTTTATATTTTAAATTT
*
33711 AAAATATTTTTATTTTTTTTAAAAAGATCGAATAAGT
131 AAAATATTTTTATTTTTTCTAAAAAGATCGAATAAGT
33748 TCTTGAACTT
Statistics
Matches: 163, Mismatches: 2, Indels: 2
0.98 0.01 0.01
Matches are distributed among these distances:
165 79 0.48
166 44 0.27
167 40 0.25
ACGTcount: A:0.39, C:0.03, G:0.07, T:0.51
Consensus pattern (167 bp):
GTTCATGTTTATATAAATAAAAGTCAAGTTAAATTCAAGGTAAAAAATAATAATATATTTTAAAT
TTTTTTAGTAATTTATTTTAATTTTTTTATATTTATTTTTTTGAACATTTTTATATTTTAAATTT
AAAATATTTTTATTTTTTCTAAAAAGATCGAATAAGT
Found at i:34766 original size:2 final size:2
Alignment explanation
Indices: 34755--34788 Score: 61
Period size: 2 Copynumber: 17.5 Consensus size: 2
34745 TTTAAATACT
34755 TA TA -A TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
34789 CATGAGCCTT
Statistics
Matches: 31, Mismatches: 0, Indels: 2
0.94 0.00 0.06
Matches are distributed among these distances:
1 1 0.03
2 30 0.97
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
TA
Found at i:35276 original size:3 final size:3
Alignment explanation
Indices: 35268--35304 Score: 74
Period size: 3 Copynumber: 12.3 Consensus size: 3
35258 CATTACCAAG
35268 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
1 ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA ATA A
35305 ACCCCCATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 34 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
ATA
Found at i:37483 original size:2 final size:2
Alignment explanation
Indices: 37467--37499 Score: 50
Period size: 2 Copynumber: 17.0 Consensus size: 2
37457 ACCCGATCCG
*
37467 AT AT AA AT A- AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
37500 TTTTATTTTT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
1 1 0.04
2 27 0.96
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (2 bp):
AT
Found at i:39099 original size:22 final size:21
Alignment explanation
Indices: 39063--39127 Score: 69
Period size: 21 Copynumber: 3.0 Consensus size: 21
39053 ATTATTGTTG
39063 TCCAAATACCCTAAAT-TTGTAAA
1 TCCAAA-A-CCTAAATCTT-TAAA
*
39086 TCTCAAAACTTAAATCTTTAAA
1 TC-CAAAACCTAAATCTTTAAA
*
39108 TCCAAAACCTAAATCCTTAA
1 TCCAAAACCTAAATCTTTAA
39128 CCCTAACACT
Statistics
Matches: 37, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
21 16 0.43
22 12 0.32
23 5 0.14
24 4 0.11
ACGTcount: A:0.45, C:0.23, G:0.02, T:0.31
Consensus pattern (21 bp):
TCCAAAACCTAAATCTTTAAA
Found at i:39115 original size:21 final size:22
Alignment explanation
Indices: 39072--39127 Score: 71
Period size: 21 Copynumber: 2.6 Consensus size: 22
39062 GTCCAAATAC
39072 CCTAAAT-TTGTAAATCTCAAAA
1 CCTAAATCTT-TAAATCTCAAAA
*
39094 CTTAAATCTTTAAATC-CAAAA
1 CCTAAATCTTTAAATCTCAAAA
*
39115 CCTAAATCCTTAA
1 CCTAAATCTTTAA
39128 CCCTAACACT
Statistics
Matches: 30, Mismatches: 3, Indels: 3
0.83 0.08 0.08
Matches are distributed among these distances:
21 16 0.53
22 12 0.40
23 2 0.07
ACGTcount: A:0.45, C:0.21, G:0.02, T:0.32
Consensus pattern (22 bp):
CCTAAATCTTTAAATCTCAAAA
Found at i:39276 original size:18 final size:19
Alignment explanation
Indices: 39241--39277 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 19
39231 CACGGAATGT
39241 AAGATTACCAGTGGGAATAA
1 AAGATTACCAG-GGGAATAA
39261 AAGATTACCA-GGGAATA
1 AAGATTACCAGGGGAATA
39278 GGATTACTGG
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 7 0.41
20 10 0.59
ACGTcount: A:0.46, C:0.11, G:0.24, T:0.19
Consensus pattern (19 bp):
AAGATTACCAGGGGAATAA
Found at i:44578 original size:18 final size:18
Alignment explanation
Indices: 44555--44591 Score: 74
Period size: 18 Copynumber: 2.1 Consensus size: 18
44545 ACATGAATAG
44555 GGTGATGACAGTCAGCTC
1 GGTGATGACAGTCAGCTC
44573 GGTGATGACAGTCAGCTC
1 GGTGATGACAGTCAGCTC
44591 G
1 G
44592 ATCATGAAGC
Statistics
Matches: 19, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.22, C:0.22, G:0.35, T:0.22
Consensus pattern (18 bp):
GGTGATGACAGTCAGCTC
Found at i:44598 original size:18 final size:18
Alignment explanation
Indices: 44559--44598 Score: 62
Period size: 18 Copynumber: 2.2 Consensus size: 18
44549 GAATAGGGTG
* *
44559 ATGACAGTCAGCTCGGTG
1 ATGACAGTCAGCTCGATC
44577 ATGACAGTCAGCTCGATC
1 ATGACAGTCAGCTCGATC
44595 ATGA
1 ATGA
44599 AGCAAATAAT
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 20 1.00
ACGTcount: A:0.28, C:0.23, G:0.28, T:0.23
Consensus pattern (18 bp):
ATGACAGTCAGCTCGATC
Found at i:44682 original size:21 final size:21
Alignment explanation
Indices: 44658--44700 Score: 86
Period size: 21 Copynumber: 2.0 Consensus size: 21
44648 AGTGAAGAAG
44658 CTATTCCAGCAGAATCGAGTT
1 CTATTCCAGCAGAATCGAGTT
44679 CTATTCCAGCAGAATCGAGTT
1 CTATTCCAGCAGAATCGAGTT
44700 C
1 C
44701 CACTACTGTT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.28, C:0.26, G:0.19, T:0.28
Consensus pattern (21 bp):
CTATTCCAGCAGAATCGAGTT
Found at i:44825 original size:17 final size:17
Alignment explanation
Indices: 44803--44861 Score: 118
Period size: 17 Copynumber: 3.5 Consensus size: 17
44793 GTAAGAGTGG
44803 TATTTCAAAACCTAAGA
1 TATTTCAAAACCTAAGA
44820 TATTTCAAAACCTAAGA
1 TATTTCAAAACCTAAGA
44837 TATTTCAAAACCTAAGA
1 TATTTCAAAACCTAAGA
44854 TATTTCAA
1 TATTTCAA
44862 GCCACTGCAT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
17 42 1.00
ACGTcount: A:0.46, C:0.17, G:0.05, T:0.32
Consensus pattern (17 bp):
TATTTCAAAACCTAAGA
Found at i:46983 original size:2 final size:2
Alignment explanation
Indices: 46976--47018 Score: 86
Period size: 2 Copynumber: 21.5 Consensus size: 2
46966 TTGAAATGTA
46976 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
47018 A
1 A
47019 ATTTTAAAAA
Statistics
Matches: 41, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 41 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:57950 original size:21 final size:21
Alignment explanation
Indices: 57926--57981 Score: 67
Period size: 21 Copynumber: 2.7 Consensus size: 21
57916 CGAGTTACCA
*
57926 GCGACGGCCGCAATAGCGTCC
1 GCGACGGCCGCAATAGCGCCC
* *
57947 GCGACAGCCACAATAGCGCCC
1 GCGACGGCCGCAATAGCGCCC
* *
57968 ACGATGGCCGCAAT
1 GCGACGGCCGCAAT
57982 CACGGTAAAT
Statistics
Matches: 28, Mismatches: 7, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
21 28 1.00
ACGTcount: A:0.25, C:0.38, G:0.29, T:0.09
Consensus pattern (21 bp):
GCGACGGCCGCAATAGCGCCC
Found at i:61388 original size:32 final size:31
Alignment explanation
Indices: 61305--61388 Score: 87
Period size: 37 Copynumber: 2.5 Consensus size: 31
61295 GTATAATATT
61305 AAAAATTATAAAATATTTATATATTTTCTTTA
1 AAAAATTA-AAAATATTTATATATTTTCTTTA
*
61337 AAAAATTAAATTCATAATATTTATATAATTTTTTTTA
1 AAAAATT-AA---A-AATATTTATAT-ATTTTCTTTA
*
61374 CAAAATTAAAAATAT
1 AAAAATTAAAAATAT
61389 AAAAAAAGTT
Statistics
Matches: 44, Mismatches: 2, Indels: 12
0.76 0.03 0.21
Matches are distributed among these distances:
32 13 0.30
33 2 0.05
35 1 0.02
36 13 0.30
37 15 0.34
ACGTcount: A:0.50, C:0.04, G:0.00, T:0.46
Consensus pattern (31 bp):
AAAAATTAAAAATATTTATATATTTTCTTTA
Found at i:62384 original size:20 final size:20
Alignment explanation
Indices: 62359--62435 Score: 82
Period size: 20 Copynumber: 3.9 Consensus size: 20
62349 ATCCTATTCC
*
62359 CTGGTAAACTTTCATTCCCA
1 CTGGTAATCTTTCATTCCCA
* *
62379 CTGGTAATCTTTTATTCTCA
1 CTGGTAATCTTTCATTCCCA
* **
62399 CTGGTAATCTTACATTCATA
1 CTGGTAATCTTTCATTCCCA
* *
62419 CTGATAATCTTACATTC
1 CTGGTAATCTTTCATTC
62436 TGTGAACCAA
Statistics
Matches: 49, Mismatches: 8, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (20 bp):
CTGGTAATCTTTCATTCCCA
Found at i:62436 original size:40 final size:40
Alignment explanation
Indices: 62359--62436 Score: 93
Period size: 40 Copynumber: 1.9 Consensus size: 40
62349 ATCCTATTCC
* * * **
62359 CTGGTAAACTTTCATTCCCACTGGTAATCTTTTATTCTCA
1 CTGGTAAACTTACATTCACACTGATAATCTTACATTCTCA
* *
62399 CTGGTAATCTTACATTCATACTGATAATCTTACATTCT
1 CTGGTAAACTTACATTCACACTGATAATCTTACATTCT
62437 GTGAACCAAA
Statistics
Matches: 31, Mismatches: 7, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
40 31 1.00
ACGTcount: A:0.26, C:0.23, G:0.09, T:0.42
Consensus pattern (40 bp):
CTGGTAAACTTACATTCACACTGATAATCTTACATTCTCA
Found at i:63004 original size:3 final size:3
Alignment explanation
Indices: 62990--63033 Score: 79
Period size: 3 Copynumber: 14.7 Consensus size: 3
62980 CCCATTTCTT
*
62990 TTA TTT TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TTA TT
63034 CACAAATTAA
Statistics
Matches: 39, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
3 39 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (3 bp):
TTA
Done.