Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002046.1 Hibiscus syriacus cultivar Beakdansim tig00004168_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  83007

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
50273--50331
29
2.0
29
100
0
118
49
13
13
23
1.78
54955--55013
29
2.0
29
100
0
118
49
13
13
23
1.78
57572--58391
216
3.8
216
92
1
1314
49
8
12
30
1.69
58415--58487
22
3.4
22
80
12
89
46
1
5
46
1.34
58479--58539
27
2.2
28
88
2
88
49
6
4
39
1.50
58581--58618
11
3.5
11
88
0
58
50
2
2
44
1.30
58417--58710
20
14.4
20
69
16
113
46
4
5
43
1.45
58756--58828
20
3.4
20
75
17
65
41
4
1
53
1.28
58767--58816
13
3.8
13
75
17
50
38
4
2
56
1.30
58796--58868
31
2.4
31
79
4
85
45
2
5
46
1.40
58886--59081
24
9.9
18
76
17
80
40
8
8
41
1.67
58881--59048
48
4.0
41
81
15
173
39
8
9
42
1.68
58942--59038
24
4.0
24
97
0
176
38
8
10
43
1.69
59034--59063
13
2.3
13
94
0
51
50
6
3
40
1.45
59019--59087
33
2.2
32
89
5
104
44
7
7
40
1.60
59061--59122
24
2.6
25
82
12
76
38
8
9
43
1.67
59115--59218
9
12.4
8
72
18
61
43
4
3
48
1.42
59114--59218
7
15.1
7
71
15
58
42
4
3
48
1.42
59115--59218
2
49.5
2
69
19
61
43
4
3
48
1.42
59244--59398
33
4.5
33
80
12
170
43
6
7
42
1.57
59268--59478
18
12.1
18
74
14
185
44
6
7
41
1.58
59244--59467
51
4.4
51
79
13
253
43
6
7
42
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59244--59467
104
2.2
103
82
10
264
43
6
7
42
1.58
59372--59502
69
1.9
69
85
6
185
46
6
5
41
1.51
59465--59536
26
2.8
26
97
2
137
50
4
0
45
1.21
59560--59700
61
2.3
61
83
2
176
48
4
9
37
1.56
61473--61519
20
2.3
20
79
13
60
48
0
2
48
1.13
61557--61608
18
2.8
18
73
23
54
57
3
0
38
1.17
61599--61697
51
1.9
51
93
0
171
48
5
4
42
1.44
61667--61707
17
2.4
17
95
0
73
46
7
0
46
1.30
63322--63353
2
16.0
2
100
0
64
50
0
0
50
1.00
70424--70491
34
2.0
34
94
0
118
22
7
27
42
1.80
73541--73634
44
2.1
44
84
0
125
36
14
19
29
1.92
74112--74161
21
2.3
23
82
6
59
32
14
16
38
1.88
74103--74142
21
1.9
21
89
0
62
27
17
17
37
1.92
74233--74297
23
2.8
23
80
0
76
21
24
21
32
1.98
78963--79025
20
3.3
19
82
10
65
22
20
7
49
1.75
78973--79026
20
2.7
20
94
0
90
22
22
7
48
1.75

Tables:   1

The End!