genome.fa.s2047.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002047.1 Hibiscus syriacus cultivar Beakdansim tig00004169_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149947

Tables:   1   

This is table  1  of  1  ( 75 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8827--8875	17	2.9	16	82	11	62	14	0	4	81	0.83
13742--13801	25	2.4	25	97	0	111	31	16	28	23	1.96
14999--15065	31	2.2	31	94	0	116	23	28	11	35	1.91
16271--16344	31	2.4	31	84	4	105	31	17	9	41	1.81
18334--18358	13	1.9	13	100	0	50	32	8	0	60	1.26
18571--18630	29	2.0	29	83	3	75	38	6	16	38	1.75
25408--25448	2	20.5	2	89	0	64	53	43	0	2	1.13
29326--29368	22	2.0	21	86	4	59	53	2	4	39	1.34
29337--29475	31	4.5	31	71	7	115	48	5	2	43	1.39
36342--36378	19	1.9	19	100	0	74	27	24	21	27	1.99
37312--37680	20	18.5	20	85	4	458	34	26	18	20	1.96
38362--38408	24	2.0	24	87	8	69	25	14	21	38	1.92
38583--38607	12	2.1	12	100	0	50	72	0	28	0	0.86
38707--38889	19	10.4	19	81	16	243	47	18	20	14	1.82
38690--38870	33	5.3	33	80	16	210	47	18	20	13	1.82
38690--38889	52	3.8	52	89	6	284	47	18	21	13	1.82
38726--38911	85	2.2	85	96	0	336	46	18	20	14	1.83
38707--38911	52	3.9	52	90	6	214	46	18	20	14	1.83
38918--39018	19	5.6	19	85	12	142	14	23	17	43	1.87
38918--39018	33	2.8	37	78	18	140	14	23	17	43	1.87
39125--39161	14	2.6	14	91	0	65	45	21	0	32	1.52
41138--41194	14	3.7	14	77	20	60	45	22	21	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41119--41211	33	2.8	33	95	0	168	47	21	20	10	1.80
41082--41216	19	7.6	19	76	16	128	45	23	19	11	1.82
41212--41340	19	7.3	19	75	17	125	8	17	28	45	1.77
41212--41303	33	2.8	33	93	3	150	7	18	28	45	1.76
42271--42360	14	5.7	14	74	23	81	42	23	25	8	1.83
42263--42377	33	3.5	33	95	0	212	45	20	24	9	1.81
42270--42382	19	6.8	18	72	23	88	43	22	24	9	1.83
42394--42448	14	3.6	14	73	21	56	9	25	23	41	1.83
42378--42448	33	2.2	33	94	0	124	8	22	25	43	1.81
42389--42470	33	2.5	33	89	2	119	9	25	21	42	1.84
42401--42489	20	4.8	20	72	19	75	12	24	19	43	1.85
42569--42639	33	2.2	33	92	0	115	47	18	22	11	1.80
42820--42874	22	2.5	22	81	0	74	20	16	40	23	1.91
43020--43212	20	9.6	20	82	5	219	19	19	25	35	1.95
43020--43212	60	3.2	60	83	0	251	19	19	25	35	1.95
43268--43319	20	2.6	20	96	0	95	21	13	26	38	1.90
43641--43900	41	6.4	41	87	7	345	19	20	24	36	1.95
43641--43787	40	3.7	40	91	4	226	21	19	25	34	1.96
43784--43897	20	5.6	20	76	8	122	14	22	23	38	1.92
43641--43947	82	3.8	81	83	8	290	20	19	23	36	1.95
43759--43925	41	4.1	40	87	8	187	17	21	23	37	1.94
44502--44541	5	7.6	5	94	5	62	0	20	55	25	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44502--44545	17	2.8	16	93	6	72	0	18	54	27	1.44
44629--44783	20	7.6	20	73	7	141	37	23	21	16	1.94
44601--44808	41	5.0	41	89	5	287	37	23	21	18	1.95
44601--44808	82	2.5	82	91	2	328	37	23	21	18	1.95
44841--44946	20	5.2	20	67	12	63	35	26	19	17	1.95
44708--44979	142	1.9	142	92	1	456	34	22	22	20	1.97
44848--44950	41	2.5	41	93	0	170	37	26	19	16	1.92
44848--44954	21	5.2	21	69	4	92	38	27	18	15	1.91
55332--55725	57	6.9	57	89	0	574	35	22	15	25	1.94
55719--55821	20	5.2	20	71	11	86	23	10	24	41	1.86
55719--55821	40	2.6	39	89	3	143	23	10	24	41	1.86
55804--55842	20	2.0	20	85	10	53	28	7	28	35	1.85
56898--56943	20	2.3	20	100	0	92	34	17	0	47	1.48
57235--57290	19	2.9	19	92	5	87	48	10	23	17	1.79
64862--64933	22	3.2	22	80	9	74	36	1	2	59	1.20
64862--64933	23	3.2	23	78	13	78	36	1	2	59	1.20
64877--64922	13	3.8	12	81	18	51	34	0	2	63	1.07
64857--64962	22	5.2	20	71	15	67	33	2	3	59	1.30
65509--65568	27	2.2	27	96	0	111	35	18	3	43	1.67
66016--66081	25	2.8	24	73	15	64	39	4	7	48	1.52
86149--86192	17	2.6	17	100	0	88	77	4	0	18	0.94
86146--86193	8	5.8	8	80	9	60	79	4	0	16	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91832--91897	27	2.9	21	68	23	60	37	27	1	33	1.66
98779--98837	29	2.0	29	90	6	93	18	16	23	40	1.91
109926--109964	20	2.0	20	85	14	55	38	0	2	58	1.12
115554--115743	6	31.7	6	94	0	317	36	33	12	16	1.87
117881--117906	2	13.0	2	100	0	52	50	0	0	50	1.00
118343--118369	14	1.9	14	100	0	54	33	22	0	44	1.53
124210--124236	4	6.8	4	100	0	54	22	0	0	77	0.76
131436--131465	15	2.0	15	93	0	51	46	3	0	50	1.18
149407--149516	35	3.2	34	80	7	123	40	24	0	35	1.56

Tables:   1

The End!