Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002049.1 Hibiscus syriacus cultivar Beakdansim tig00004173_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  111340

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9168--9213
23
2.1
23
84
8
60
41
13
4
41
1.63
11263--11304
5
8.4
5
89
0
57
2
23
0
73
0.94
11263--11307
15
3.0
15
83
0
63
2
24
0
73
0.95
19552--19620
29
2.3
30
76
9
70
50
2
14
31
1.57
19764--19822
31
1.9
31
85
0
82
27
6
13
52
1.65
20091--20119
2
14.5
2
100
0
58
48
0
0
51
1.00
25040--25151
3
37.0
3
83
1
143
32
2
0
65
1.07
25025--25149
12
10.9
11
81
13
62
30
4
0
65
1.11
26468--26506
20
2.0
20
90
5
62
35
0
5
58
1.20
26556--26600
22
2.2
20
84
8
54
37
2
4
55
1.32
37872--37931
1
60.0
1
83
0
75
91
0
8
0
0.41
37866--37931
9
6.7
10
83
13
84
89
0
10
0
0.49
37873--37933
25
2.4
25
91
2
95
90
0
9
0
0.46
38260--38302
18
2.6
16
75
13
50
32
9
6
51
1.61
38861--39365
52
9.7
52
96
0
902
24
14
23
37
1.92
40004--40574
119
4.8
119
95
1
1010
38
13
20
27
1.90
40825--40936
3
37.0
3
83
1
143
32
2
0
65
1.07
40810--40934
12
10.9
11
81
13
62
30
4
0
65
1.11
42252--42290
20
2.0
20
90
5
62
35
0
5
58
1.20
46743--46799
14
4.4
14
76
17
59
8
12
24
54
1.65
46744--46818
24
3.1
24
88
3
98
12
10
21
56
1.66
47540--47597
10
6.7
10
68
31
53
8
12
20
58
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47546--47593
16
3.1
16
96
3
89
6
12
22
58
1.57
47663--47695
16
2.1
16
100
0
66
6
12
24
57
1.57
53328--53366
15
2.5
17
80
19
50
56
0
0
43
0.99
56888--56924
19
2.0
18
89
5
56
45
32
16
5
1.70
69714--69803
2
45.0
2
100
0
180
50
0
0
50
1.00
72385--72438
27
2.0
27
96
0
99
20
37
12
29
1.90
78662--78722
29
2.1
29
84
6
79
32
3
27
36
1.73
78667--78733
29
2.3
29
82
7
75
37
4
26
31
1.77
80242--80353
35
3.2
34
83
7
136
41
21
0
35
1.59
81569--81681
35
3.2
34
88
5
163
33
0
23
42
1.60
94020--94158
32
4.4
32
75
9
126
29
23
18
28
1.98
94081--94158
32
2.4
32
91
0
129
28
24
19
28
1.98
94070--94158
32
2.8
32
84
5
128
30
22
19
28
1.98
100341--100380
19
2.2
18
86
13
55
27
10
2
60
1.42
103274--103359
10
9.0
10
72
19
51
77
2
3
16
1.00
103298--103332
18
1.9
18
88
0
52
77
0
2
20
0.90
103319--103359
20
2.0
20
95
0
73
82
4
4
7
0.93
104023--104058
16
2.2
16
95
0
63
27
0
0
72
0.85
104019--104070
12
4.3
12
78
9
52
25
0
0
75
0.81
104019--104078
28
2.2
27
87
3
84
23
0
0
76
0.78
104008--104073
20
3.5
20
76
18
68
24
0
3
72
0.98
104323--104361
8
4.9
8
87
0
51
74
2
0
23
0.94

Tables:   1

The End!