Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000205.1 Hibiscus syriacus cultivar Beakdansim tig00000365_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60243

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6837--6991
74
2.1
74
90
0
238
34
24
14
27
1.94
6989--7027
13
2.9
14
81
14
55
25
20
17
35
1.95
7185--7225
2
20.5
2
100
0
82
48
0
0
51
1.00
13675--13764
30
3.0
30
74
16
89
34
16
3
45
1.64
23515--23550
8
4.5
8
100
0
72
38
0
11
50
1.38
27018--27253
7
33.3
7
84
13
238
81
0
14
4
0.84
27132--27254
1
123.0
1
75
0
111
87
0
12
0
0.53
27010--27254
10
23.7
10
72
18
164
81
0
13
4
0.84
28538--28610
37
2.0
37
91
0
119
38
17
20
23
1.93
28627--28870
55
4.4
55
84
5
219
28
15
22
32
1.95
28672--28879
55
3.8
55
87
3
233
27
16
24
31
1.96
28671--28877
110
1.9
111
83
4
276
28
15
24
31
1.96
33099--33128
15
2.0
15
93
0
51
40
13
10
36
1.78
33247--33292
23
2.0
23
95
0
83
47
10
4
36
1.58
38033--38079
3
15.7
3
95
0
85
68
2
0
29
1.02
38657--38747
3
30.0
3
82
6
94
40
1
0
58
1.05
39152--39187
17
2.1
18
94
5
65
77
5
16
0
0.94
40865--40907
18
2.4
18
76
7
52
25
4
2
67
1.22
40902--40939
15
2.8
13
88
11
51
23
5
2
68
1.23
44166--44198
15
2.2
15
94
0
57
30
24
6
39
1.79
52680--53718
83
12.5
83
95
1
1658
28
12
21
37
1.90
54445--55217
112
7.0
112
91
3
1128
36
15
18
29
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55426--55503
9
9.0
8
74
18
50
34
1
0
64
1.02
55436--55526
3
30.0
3
79
10
96
38
1
0
60
1.04
55939--55980
20
2.1
20
91
8
68
80
4
14
0
0.86
56898--56939
19
2.2
20
86
4
59
33
2
2
61
1.21
58745--59007
65
4.0
65
90
0
391
30
13
22
34
1.92
58745--59056
130
2.4
130
84
2
349
29
14
22
33
1.93

Tables:   1

The End!