Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002051.1 Hibiscus syriacus cultivar Beakdansim tig00004177_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79524

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2276--2305
15
2.0
15
93
0
51
16
26
0
56
1.40
6875--6913
17
2.4
17
95
4
71
51
5
0
43
1.24
7383--7492
30
3.6
30
86
6
143
40
38
1
19
1.62
15385--15422
20
1.9
20
94
0
67
13
28
34
23
1.92
16208--16268
22
2.8
22
87
5
79
24
21
26
27
1.99
17158--17189
14
2.3
14
94
0
55
21
15
15
46
1.83
21698--21751
27
2.0
28
85
10
76
66
3
0
29
1.09
22017--22086
26
2.8
26
87
10
103
24
4
55
15
1.58
22226--22324
51
1.9
51
87
0
144
24
33
25
17
1.96
23210--23236
2
13.5
2
100
0
54
48
0
0
51
1.00
25386--25415
7
4.4
7
91
8
53
23
30
30
16
1.96
25390--25415
13
2.0
13
100
0
52
23
30
30
15
1.95
25413--25458
9
4.9
10
76
12
53
8
21
47
21
1.77
25412--25464
14
3.8
14
94
0
97
9
20
49
20
1.77
25411--25473
14
4.5
14
82
7
83
9
23
47
19
1.78
25411--25473
28
2.3
27
89
8
99
9
23
47
19
1.78
26324--26387
18
3.6
18
79
8
67
48
18
4
28
1.68
26312--26446
36
3.7
35
78
9
130
44
22
4
28
1.72
26479--26527
23
2.1
23
100
0
98
32
6
8
53
1.55
26479--26536
23
2.5
23
91
5
82
32
5
10
51
1.58
28346--28411
34
1.9
34
100
0
132
40
12
16
30
1.85
43000--43080
38
2.1
38
97
0
153
32
14
14
38
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47112--47142
15
2.1
15
93
0
53
45
0
0
54
0.99
47675--47719
23
2.0
23
86
0
63
33
8
4
53
1.52
49075--49138
22
3.0
22
77
13
71
43
0
3
53
1.16
57648--57698
25
2.0
25
100
0
102
27
23
11
37
1.90
65549--65680
68
1.9
68
95
0
237
43
9
3
44
1.51
65549--65697
68
2.2
68
89
1
228
44
8
2
44
1.47
75322--75347
6
4.3
6
100
0
52
0
15
0
84
0.62

Tables:   1

The End!