genome.fa.s2054.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002054.1 Hibiscus syriacus cultivar Beakdansim tig00004182_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55615

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28099--28191	21	4.5	21	78	4	100	39	18	24	17	1.91
28099--28191	41	2.3	41	100	0	186	39	18	24	17	1.91
28118--28252	41	3.3	41	84	4	148	37	21	20	20	1.94
28180--28273	20	4.7	20	80	7	91	32	25	17	24	1.96
28792--28858	19	3.5	19	85	2	89	47	25	16	10	1.78
28854--28985	19	7.1	19	77	11	130	12	21	21	44	1.85
28859--28935	39	2.0	39	89	5	120	10	19	24	45	1.81
29881--29917	15	2.5	15	100	0	74	16	0	16	67	1.23
31058--31124	21	3.2	21	68	6	55	23	34	20	20	1.97
31002--31094	42	2.2	42	80	3	107	21	37	16	24	1.93
32471--32506	14	2.6	14	95	0	63	30	0	25	44	1.54
32686--32802	19	6.7	19	73	18	119	12	23	18	45	1.84
32686--32802	52	2.2	52	95	0	207	12	23	18	45	1.84
32703--32822	52	2.3	52	89	1	177	15	22	19	43	1.87
34992--35016	12	2.1	12	100	0	50	0	28	0	72	0.86
35191--35244	24	2.2	24	90	0	81	38	20	16	24	1.92
36278--36335	20	2.9	20	94	0	98	37	22	22	17	1.93
36342--36403	19	3.3	19	95	0	106	14	22	19	43	1.87
38321--38387	19	3.5	19	79	4	80	37	22	23	16	1.94
38376--38433	14	3.9	14	77	16	62	48	24	17	10	1.78
38360--38438	32	2.4	33	93	2	133	46	22	18	11	1.81
38445--38539	19	5.6	17	70	24	69	11	20	23	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38467--38523	14	3.9	14	77	18	62	8	17	26	47	1.77
38450--38539	32	2.8	33	93	5	157	11	18	23	46	1.81
38524--38577	20	2.8	19	86	5	72	16	24	24	35	1.95
38512--38577	19	3.4	19	81	4	78	15	22	24	37	1.92
39047--39091	18	2.5	18	88	0	63	13	15	44	26	1.83
40618--40661	22	2.0	22	95	0	79	18	15	45	20	1.85
40829--40942	20	5.7	20	75	10	81	26	16	23	33	1.96
40931--41023	20	4.5	21	78	4	100	17	24	18	39	1.91
40870--41004	41	3.3	41	83	4	139	20	20	20	37	1.94
40931--41023	41	2.3	41	100	0	186	17	24	18	39	1.91
45692--45892	34	6.0	34	69	17	118	40	5	6	47	1.54
45811--45887	32	2.3	32	86	4	100	45	3	3	46	1.39
50881--50917	19	2.0	19	89	5	58	27	16	51	5	1.66
52239--52373	28	4.9	28	92	3	220	15	21	28	34	1.94
52239--52373	54	2.5	55	92	2	218	15	21	28	34	1.94
53805--53929	60	2.0	62	92	7	209	28	20	17	32	1.96

Tables:   1

The End!