Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002055.1 Hibiscus syriacus cultivar Beakdansim tig00004188_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63309

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1564--1609
23
2.0
23
83
8
58
36
0
2
60
1.09
2098--2150
26
2.0
26
92
0
88
18
9
5
66
1.41
2768--2845
22
3.5
22
87
0
111
28
20
21
29
1.98
24040--24079
18
2.3
18
87
8
57
35
0
0
65
0.93
24441--24497
16
3.6
16
75
13
64
29
1
0
68
1.00
24445--24495
15
3.3
15
76
15
59
29
1
0
68
1.00
25822--25896
22
3.4
22
65
7
62
33
6
29
30
1.83
25824--25892
21
3.2
21
62
22
52
31
7
28
31
1.84
25821--25908
44
2.0
44
100
0
176
36
6
29
27
1.83
38667--38875
84
2.4
86
78
8
212
26
20
3
49
1.65
38599--38948
43
8.2
44
76
8
235
25
19
6
49
1.70
38599--38955
85
4.2
86
76
12
308
25
18
5
50
1.69
38640--38937
128
2.3
128
83
6
345
25
19
5
48
1.71
38708--38972
128
2.1
128
82
6
331
25
20
4
48
1.69
45434--45468
17
2.0
18
94
5
63
40
17
5
37
1.73
49327--49360
5
6.8
5
100
0
68
0
38
0
61
0.96
49475--49505
2
15.5
2
100
0
62
51
0
0
48
1.00
49923--49949
12
2.2
12
100
0
54
51
14
0
33
1.43
49921--49957
16
2.3
16
95
0
65
51
13
0
35
1.41
50137--50194
29
2.0
29
100
0
116
31
10
10
48
1.71
50139--50210
29
2.6
29
86
4
85
30
8
9
51
1.64
53066--53138
30
2.4
30
100
0
146
31
30
4
34
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
54411--54445
2
17.5
2
93
0
61
48
0
2
48
1.16

Tables:   1

The End!