Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002056.1 Hibiscus syriacus cultivar Beakdansim tig00004190_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  133708

Tables:   1   

This is table  1  of  1  ( 38 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7933--7959
13
2.1
13
100
0
54
51
22
11
14
1.73
8226--8293
30
2.3
30
92
0
109
33
13
35
17
1.89
8401--8464
17
3.9
17
71
20
55
51
0
0
48
1.00
17844--17883
21
1.9
21
85
10
55
40
17
12
30
1.86
20400--20441
21
2.0
21
100
0
84
42
9
9
38
1.70
33600--33714
59
1.9
59
82
6
144
36
5
25
33
1.78
40568--40683
60
1.9
59
86
6
162
34
14
15
35
1.88
46857--46932
36
2.1
36
85
7
100
47
1
2
48
1.24
47072--47108
20
1.9
19
89
10
58
18
21
10
48
1.78
47078--47115
20
1.9
20
88
0
58
21
23
10
44
1.83
55940--55972
12
2.8
12
100
0
66
51
0
0
48
1.00
55952--56011
19
3.0
20
80
9
59
53
5
1
40
1.33
56890--57595
353
2.0
353
99
0
1394
30
16
19
34
1.93
60667--60708
14
3.0
13
81
18
57
54
2
7
35
1.41
60917--61799
105
8.4
105
95
0
1444
22
18
25
33
1.97
62566--62661
50
1.9
50
89
0
147
14
21
14
48
1.79
72044--72108
10
6.3
10
74
13
51
73
1
7
16
1.13
73241--73277
2
18.5
2
88
0
56
48
5
0
45
1.25
74674--74715
14
3.0
13
81
18
57
54
2
7
35
1.41
79968--80003
18
2.1
18
89
5
56
55
2
0
41
1.14
81107--81146
20
2.0
20
90
0
62
37
5
27
30
1.78
86097--86165
23
2.9
25
72
6
63
33
2
4
59
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86192--86235
17
2.4
19
82
17
58
36
2
2
59
1.23
89729--89758
2
14.5
2
93
6
51
50
3
0
46
1.18
92492--92704
107
2.0
107
99
0
417
36
14
18
30
1.91
95358--95424
34
2.0
34
96
0
125
41
2
8
46
1.50
99115--99161
25
1.9
24
83
12
60
36
2
0
61
1.08
99115--99163
12
4.0
12
82
10
55
38
2
0
59
1.09
110040--110075
18
2.0
18
94
0
63
50
8
11
30
1.67
110102--110165
20
3.2
20
88
2
103
29
25
7
37
1.84
111455--111498
2
22.0
2
95
0
79
50
2
0
47
1.13
111809--111842
14
2.4
14
100
0
68
38
17
35
8
1.81
121188--121214
14
1.9
14
100
0
54
18
29
7
44
1.77
121417--121473
23
2.4
24
82
8
71
49
1
0
49
1.11
121417--121473
12
4.8
12
73
6
53
49
1
0
49
1.11
121471--121518
20
2.5
20
96
3
89
52
8
0
39
1.32
121897--121950
22
2.5
20
80
16
63
46
0
1
51
1.11
132115--132204
26
3.3
26
71
14
67
43
1
5
50
1.33

Tables:   1

The End!