genome.fa.s2057.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002057.1 Hibiscus syriacus cultivar Beakdansim tig00004191_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  105188

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4175--5062	8	112.5	8	92	6	1456	24	11	25	38	1.89
11253--11309	22	2.5	22	83	13	64	52	1	0	45	1.11
11386--11476	27	3.4	26	74	15	78	48	1	1	49	1.15
11439--11507	19	3.6	19	72	14	61	50	1	0	47	1.09
11402--11487	27	3.1	27	75	18	79	48	1	1	48	1.16
11502--11546	23	2.0	23	86	0	63	53	2	2	42	1.25
11515--11683	91	1.9	86	81	12	200	49	4	0	46	1.21
11623--11723	47	2.1	48	82	10	118	51	0	1	46	1.12
17888--17914	13	2.1	13	100	0	54	14	11	7	66	1.43
20005--20087	29	2.8	29	92	1	139	43	9	14	32	1.78
24774--24856	29	2.8	29	92	1	139	43	9	14	32	1.78
34665--34709	21	2.1	21	87	0	63	31	28	24	15	1.96
35271--35317	23	2.0	24	91	4	78	44	0	21	34	1.52
35495--35650	31	5.0	31	93	1	260	21	19	21	37	1.95
39152--39315	70	2.3	70	85	8	217	32	6	18	42	1.76
39179--39333	35	4.3	36	90	4	235	31	5	19	43	1.73
42575--42654	31	2.5	31	80	6	90	46	6	2	45	1.42
59040--59141	51	2.0	51	98	0	195	29	21	10	38	1.87
70350--70381	16	2.0	16	100	0	64	18	25	18	37	1.94
75259--75288	4	7.5	4	92	0	51	26	3	23	46	1.68
78344--78396	25	2.1	25	82	6	63	33	11	3	50	1.56
78381--78439	19	3.1	19	70	18	59	38	5	5	50	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79614--79694	35	2.3	35	100	0	162	44	22	8	24	1.81
95241--95298	20	2.9	20	92	0	89	46	8	22	22	1.79
95446--95521	37	2.1	37	82	7	93	48	3	1	46	1.29
99244--99312	23	3.0	23	78	0	84	31	23	24	20	1.98
99380--99429	21	2.3	23	82	6	59	38	16	14	32	1.88
99399--99438	21	1.9	21	89	0	62	37	17	17	27	1.92
99903--99994	44	2.1	44	83	0	112	29	19	16	34	1.94
102996--103062	33	2.0	34	91	2	109	41	28	7	22	1.80

Tables:   1

The End!