Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002058.1 Hibiscus syriacus cultivar Beakdansim tig00004192_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  103696

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2203--2236
2
17.0
2
87
0
50
44
0
55
0
0.99
2206--2246
8
5.2
8
83
13
50
41
0
58
0
0.98
22077--22133
28
2.0
28
90
6
89
26
8
5
59
1.48
22014--22194
72
2.5
73
97
0
337
34
7
4
53
1.52
27296--27370
6
12.5
6
98
0
141
32
52
16
0
1.44
28061--28122
6
10.5
6
98
1
117
0
16
51
32
1.44
28212--28401
20
9.3
20
80
5
193
22
24
17
36
1.95
28212--28381
40
4.2
40
85
5
225
22
24
17
35
1.95
28218--28401
83
2.2
82
93
2
316
22
24
16
36
1.94
28210--28505
20
14.6
20
75
7
159
19
22
19
38
1.93
29456--29548
29
3.2
29
81
6
98
33
9
16
40
1.81
31498--31633
60
2.3
59
77
8
143
30
14
16
38
1.89
34200--34290
41
2.2
41
94
2
155
17
15
19
47
1.83
34524--34572
22
2.2
22
88
0
71
51
2
0
46
1.12
34557--34618
23
2.7
23
85
5
72
53
1
3
41
1.27
34612--34723
53
2.2
52
79
9
122
47
0
2
49
1.22
34692--34731
17
2.3
18
86
4
55
45
2
0
52
1.14
34738--34781
22
2.0
22
81
4
52
52
2
2
43
1.26
35071--35121
19
2.6
20
90
3
77
43
23
17
15
1.88
35071--35368
20
14.6
20
78
7
152
38
19
23
18
1.93
35155--35368
103
2.1
103
88
0
311
36
17
25
20
1.94
35196--35358
83
2.0
83
88
0
245
36
17
25
20
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
35176--35366
40
4.7
40
84
3
229
37
17
25
20
1.94
35455--35646
6
32.0
6
96
0
258
33
50
7
9
1.62
36340--36455
5
22.6
5
97
0
115
0
19
49
31
1.49
36335--36455
15
7.9
15
88
2
134
0
20
47
31
1.50
36537--36576
20
2.0
20
90
0
62
10
17
20
52
1.72
36569--36739
20
8.4
20
86
3
225
21
25
16
36
1.94
36582--36760
83
2.2
83
90
0
277
21
25
17
35
1.95
36547--36864
20
15.6
20
77
7
147
18
22
19
39
1.92
36814--36864
19
2.6
20
90
3
77
15
17
23
43
1.88
37072--37101
14
2.1
14
93
0
51
43
10
0
46
1.37
37714--37764
15
3.6
14
85
12
61
70
5
0
23
1.09
37950--37992
16
2.6
17
82
10
54
53
2
2
41
1.26
42680--43466
105
7.5
105
96
1
1425
21
17
25
34
1.95
44189--44318
67
2.0
66
85
1
179
11
23
10
54
1.66
56794--56941
34
4.4
34
99
0
278
27
10
26
35
1.89
58209--58652
232
2.0
219
80
6
485
33
11
21
33
1.90
74925--74962
17
2.2
17
86
9
51
18
0
13
68
1.21
83715--83757
15
2.8
15
89
3
59
37
2
4
55
1.33
87278--87325
22
2.1
23
85
11
64
35
8
4
52
1.51
95797--95821
12
2.1
12
100
0
50
48
24
12
16
1.79
96088--96155
30
2.3
30
92
0
109
33
13
35
17
1.89
96238--96266
2
14.5
2
100
0
58
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
96247--96334
39
2.2
42
81
8
110
47
1
0
51
1.08

Tables:   1

The End!