genome.fa.s206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000206.1 Hibiscus syriacus cultivar Beakdansim tig00000366_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74074

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2102--2147	3	15.3	3	90	0	74	4	30	0	65	1.12
11123--11186	25	2.4	27	85	12	80	43	3	4	48	1.39
17415--17458	22	2.0	22	86	0	61	38	4	0	56	1.20
18099--18142	18	2.4	18	88	0	61	22	27	9	40	1.84
22870--22956	44	2.0	44	93	0	147	39	13	18	28	1.89
30633--30771	42	3.3	42	80	6	122	34	20	18	25	1.96
30757--30876	41	2.9	41	88	4	188	33	16	20	30	1.94
30977--31082	41	2.6	40	83	10	117	24	15	16	44	1.85
32558--32592	16	2.2	16	94	0	61	14	5	20	60	1.54
39674--39725	21	2.5	21	83	0	77	40	17	38	3	1.68
39718--39776	21	2.8	21	89	0	82	47	16	32	3	1.64
40189--40536	43	8.1	43	77	7	260	33	22	15	28	1.95
40279--40484	86	2.4	86	87	4	290	31	21	15	32	1.94
49365--49414	19	2.6	19	96	0	91	32	18	28	22	1.97
49718--49779	25	2.4	25	81	7	72	37	12	8	41	1.73
49823--49881	31	1.9	30	83	10	75	40	3	22	33	1.70
60217--60331	36	3.2	36	87	3	124	33	13	12	40	1.81
60247--60331	37	2.3	37	93	2	145	31	16	11	40	1.85
60297--60436	68	2.1	67	80	9	160	33	20	10	35	1.87
60351--60574	104	2.1	105	90	4	346	36	15	11	36	1.83
60351--60614	104	2.5	103	87	4	334	34	15	12	36	1.86
60682--60929	66	3.8	66	86	1	320	28	18	13	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
60928--61107	97	1.9	97	86	2	263	31	28	15	25	1.96
61359--61411	3	17.7	3	84	7	72	30	0	1	67	1.01
66570--66614	16	2.8	16	93	0	72	40	26	20	13	1.89
66659--66706	24	2.2	22	85	14	64	58	0	4	37	1.18
66668--66714	24	2.1	23	88	11	71	61	0	4	34	1.15
68091--68131	16	2.6	16	100	0	82	12	17	19	51	1.76
68772--68813	21	1.9	23	85	9	61	28	14	23	33	1.94
69579--69625	20	2.3	21	92	3	78	42	38	10	8	1.70
71113--71176	31	2.1	31	100	0	128	34	15	23	26	1.95
72858--72984	43	3.1	40	80	10	132	14	18	18	48	1.81

Tables:   1

The End!