Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: VEPZ01002060.1 Hibiscus syriacus cultivar Beakdansim tig00004196_pilon, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 11971
ACGTcount: A:0.34, C:0.17, G:0.19, T:0.31


Found at i:6110 original size:3 final size:3

Alignment explanation


    Indices: 6104--6213  Score: 202
    Period size: 3  Copynumber: 36.7  Consensus size: 3

       6094 TTTTTATCCA

                                                                           
       6104 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT

                      *                                             *      
       6152 TAT TAT TAC TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT
          1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT

                              
       6200 TAT TAT TAT TAT TA
          1 TAT TAT TAT TAT TA

       6214 AATATATATT


Statistics
Matches: 103,  Mismatches: 4, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
   3  103  1.00

ACGTcount: A:0.34, C:0.02, G:0.00, T:0.65


Consensus pattern (3 bp):   
TAT

Found at i:6225 original size:11 final size:11

Alignment explanation


    Indices: 6209--6243  Score: 52
    Period size: 11  Copynumber: 3.2  Consensus size: 11

       6199 TTATTATTAT

                     * 
       6209 TATTAAATATA
          1 TATTAAATAAA

                       
       6220 TATTAAATAAA
          1 TATTAAATAAA

               *       
       6231 TATAAAATAAA
          1 TATTAAATAAA

              
       6242 TA
          1 TA

       6244 ATTACAGACC


Statistics
Matches: 22,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  11   22  1.00

ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37


Consensus pattern (11 bp):   
TATTAAATAAA
Done.