genome.fa.s2063.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002063.1 Hibiscus syriacus cultivar Beakdansim tig00004207_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  31281

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
172--207	14	2.6	14	95	0	63	33	0	22	44	1.53
313--414	19	5.6	19	84	13	151	44	17	23	14	1.86
429--482	14	3.6	14	76	23	56	11	20	20	48	1.80
442--673	19	13.4	19	79	19	276	13	21	18	46	1.83
421--737	32	9.5	33	80	17	288	13	21	18	46	1.83
442--706	51	5.2	52	87	11	379	13	21	17	46	1.83
3195--3241	24	2.0	24	87	8	69	38	21	14	25	1.92
3920--4129	20	10.5	20	85	2	215	20	17	25	37	1.94
4096--4193	20	4.8	20	77	3	79	21	18	23	36	1.95
4096--4252	41	3.9	41	70	14	110	18	17	25	38	1.93
14722--14762	19	2.1	19	86	4	55	24	0	9	65	1.22
14924--14979	29	1.9	29	96	0	103	46	10	8	33	1.70
18073--18119	19	2.3	20	82	7	60	36	8	6	48	1.59
18120--18148	15	1.9	15	100	0	58	34	6	6	51	1.55
18298--18347	24	2.0	25	85	11	68	44	4	4	48	1.40
18735--18946	105	2.0	105	100	0	424	26	20	28	24	1.99
20512--20551	19	2.1	19	90	0	62	42	2	0	55	1.13
21300--21340	18	2.2	19	91	4	66	46	4	7	41	1.53
22782--22943	48	3.4	48	85	0	207	24	16	26	32	1.96
22812--22960	48	3.1	46	82	5	165	22	18	25	32	1.97
23051--23129	34	2.3	34	86	0	113	48	3	22	25	1.68
23399--23436	2	19.5	2	94	5	69	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25497--25557	21	2.6	24	78	21	76	52	0	0	47	1.00
25507--25550	11	4.0	11	82	8	54	47	0	0	52	1.00
25507--25650	21	6.4	22	73	18	75	54	1	0	43	1.08
25541--25640	3	33.3	3	73	18	84	59	2	0	39	1.09
25544--25631	5	16.6	5	74	21	65	57	2	0	39	1.11
25513--25650	10	14.4	10	67	27	61	55	1	0	42	1.08
25541--25640	24	4.3	24	72	23	97	59	2	0	39	1.09
25891--25942	20	2.6	19	79	11	59	57	0	0	42	0.98
27710--27788	38	2.1	39	95	2	142	36	15	22	25	1.93

Tables:   1

The End!