Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01002065.1 Hibiscus syriacus cultivar Beakdansim tig00004210_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70689

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2435--2487
2
26.5
2
100
0
106
49
0
0
50
1.00
2999--3058
30
2.0
30
93
0
102
10
21
13
55
1.67
3882--3913
15
2.0
17
88
11
50
31
15
6
46
1.71
4002--4050
22
2.1
23
82
14
57
77
6
12
4
1.09
4038--4075
18
2.1
18
90
0
58
78
10
0
10
0.95
9100--9157
30
1.9
30
85
0
80
37
3
10
48
1.54
12772--12842
36
2.0
36
100
0
142
64
2
11
21
1.38
13269--13314
21
2.0
23
84
12
60
28
0
2
69
1.00
16594--16632
19
2.1
19
95
0
69
28
17
10
43
1.82
17498--17575
21
3.4
21
74
19
66
26
2
5
65
1.27
17589--17634
21
2.3
20
82
13
60
58
0
0
41
0.98
20453--20494
21
2.0
21
86
4
59
26
2
0
71
0.98
21169--21404
35
6.6
35
73
10
149
43
4
10
41
1.60
21211--21315
37
2.9
36
76
9
106
40
4
9
44
1.58
21125--21401
35
7.6
35
69
14
120
43
4
9
41
1.58
21216--21423
106
1.9
107
81
11
248
43
5
9
41
1.60
21392--21431
21
1.9
21
84
0
53
45
5
10
40
1.60
22742--22819
31
2.4
32
80
16
88
26
1
1
70
1.03
22766--22808
21
2.1
20
86
4
59
23
0
2
74
0.93
28419--28495
23
3.3
23
78
7
84
32
15
23
28
1.95
28670--28705
15
2.4
15
95
0
63
36
13
2
47
1.58
32388--32439
23
2.3
23
86
0
68
23
15
21
40
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33546--33585
21
2.0
21
95
5
73
35
7
0
57
1.27
42140--42177
7
5.4
7
100
0
76
28
28
13
28
1.94
42257--42304
20
2.4
20
96
0
87
52
0
6
41
1.27
56044--56112
2
35.0
2
97
2
131
49
0
0
50
1.00
56720--56777
20
2.9
19
74
18
64
48
3
0
48
1.18
59905--60012
55
2.0
55
100
0
216
18
22
22
37
1.95
65281--65353
35
2.1
35
82
5
85
47
5
0
46
1.25
68108--68290
43
4.2
43
75
12
135
27
14
6
51
1.66
68164--68343
44
4.1
42
77
11
141
27
18
5
48
1.70
68164--68329
87
1.9
87
81
4
201
27
18
4
50
1.67
68184--68343
44
3.7
44
80
6
146
26
20
6
47
1.73
68871--68931
22
2.8
22
85
9
97
40
4
8
45
1.55
69213--69255
21
2.0
21
95
0
77
27
9
30
32
1.88

Tables:   1

The End!